Magallana gigas (Pacific oyster): 105344506
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Entry
105344506 CDS
T03920
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105344506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105344506
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105344506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_17
TPR_11
TPR_16
TPR_14
TPR_8
TPR_12
TPR_7
ANAPC3
TPR_9
FAT
Coatomer_WDAD
Fis1_TPR_C
TPR_15
Motif
Other DBs
NCBI-GeneID:
105344506
NCBI-ProteinID:
XP_011450592
LinkDB
All DBs
Position
LG3:43660313..43686789
Genome browser
AA seq
1504 aa
AA seq
DB search
MIGFDILKRCNPNIHKTVEKPEDSFLMDPKEVKSALKNARECIKNKDYKEALRHCKGVLA
QDKSNYNAFVFVGVAADGLEQADQAVKAYRRATEVDPEQPLAWQGLSGFYEKHPSSENDK
ELLQVYKKLRGLCEKDSDKKIEITKKLVHLHIKLGEVVEGVDLYIKLLSEVSDDSIKCSL
QTELLFLLSRLPSLTQDQEQLLVDMVESVLKMDSHLEEGVVGLYLDVLIKKNDASRLKKC
CQLVCKKYPSMKYPLEVNILLYMDKALGSESLLPIMEAALSDLMTRLAELDSASQILTAA
QGFQSLCNKELILARDSFLKVLPDLETTVCVQYYLSLTFYLLHKLTDAESTVKQCVLTLG
KKTRRLTVASGPVSRTVSVLKARILFHTGTPSSLQTALTLTQELCTEMSSHTVLSLQGHI
LLKLNRVEETEEIIGKLDDGENRMALEGHVKFYQAEFTKSAVIFCELIKKVSTSSEYHLM
YAKSLWYDKNSLSNNLQTCYTALLKSAKLDPYSSEPFEYLGRFYTEIQKDKGKGKRCYQK
AFDLDRNNDKAGEALCDLMTELGEEEDAYQLLLSVTSSASAGCCKWAWLRLGLHQVKHDT
ISAAISSFQSALRADPKDPHVFECLAEAYYKRGSYTAALKAFKKASELNPKSLYSLFMIA
CIKQTLRVLSEAVDNYKHILEGSPNYVPALKGLGETYVLQAKHHLSQGFNGRAKLNCQDA
LQCLTRAVCHRPDLSCLWKLMGDSCTIIHPLPTKNFSFVVPENLYKSKDSENSCELNLQQ
TLQLGARCYGRALKLLPECAQLWHDLGFNLYQQSLHSEDENAVGVAEKSAEALKKGLSLE
PANHQIWNTLGLVYCHSGLNRQSLGQHCFIKSIQAESENVVAWTNLATLYLEKGNIQLAH
EAFKKAQSLDPNYVSCWIGQAMIAETVGDDDAMDLFRHTTELSPHVEGSMGYAHWVCTLH
KDKAKHSTEMYRYAIHQMAAIPAASDALARYLDLVKTNPCAYNMYGLLMEQQELYRSAKT
AFIRSINLLEPSDILLNHVKLNLARVLCKLGDYSGAVTLYTKFGELDSLQDLCHMGLAFY
KSQQYTESYQAYDKALEVSTNDTDSSQIHAALGMVAYKFGDVDGAKASLFQSSQLQPASR
HGLEALCALGLKCRDVTLTHAVLQELVGTEMDNSGIYFTVLQHGLLEENWELAKSFLEKC
IHWFPDKDTLWRLLSRLQLRHHHGNKPSTAAMCMQAAMSLEPKCQELMTEVAMGQLLDGK
HVSKDTKNNALLSAQRALLINPGKLGNWCSLVSSVHCQSELEAESERVQALHKIETRYLT
WLMSAEELSEDLRTWCVKQLTAAQLLSGERTLESLSGELKEYIANLLQDKSLQSSDVQHV
FSLYKTLLNDGGNDEVNKTFSRLTDDLIKKTSSPDPLIMLMRAIILMKTNPKLAKHRLVD
VLIAVRSERPQPLLLPSVSRRCLLSILRESPDKDVELIQLILTEAENDGDDETVNFYQQF
IKDA
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggttcgacattcttaaaagatgtaacccaaatatacacaagacagttgaaaaa
cctgaagacagttttctgatggaccccaaggaagttaaatcagcattgaaaaatgctaga
gaatgtataaagaataaagactacaaagaggctctgagacattgcaaaggagttttggca
caggacaagagcaattacaatgcctttgtatttgtgggggtggctgctgatgggcttgaa
caggccgatcaggctgtgaaggcatacagacgagccacagaggttgatccagaacaacca
ctcgcatggcagggtctgagcggtttctatgagaagcacccatcctctgaaaatgacaag
gaactattgcaggtctataaaaaactcagaggactttgtgaaaaagacagtgataagaaa
attgagattacaaagaagcttgttcatctacacattaagcttggggaggttgttgagggt
gtagatctgtacatcaaattgttatccgaggtgtcagatgactccattaaatgtagtcta
cagacagagttattgttcttgctgtccagattgccttccttaacacaagatcaagaacaa
ctgctggtagatatggttgaaagtgttctgaagatggactcacacctagaggagggggtg
gttgggctctacttggatgttcttataaagaaaaatgatgcatccaggttgaaaaagtgt
tgccagcttgtttgtaaaaagtatccatcaatgaagtatccacttgaagtcaacatactg
ttatatatggataaagccttaggttctgagtcccttctgcctataatggaggctgctctt
tctgatttgatgacaagacttgcagagttagacagtgcgagtcagatacttacagctgct
cagggttttcaatccctctgtaacaaagaactgatcctggccagggacagcttcctcaaa
gtgctaccagacctggagaccacagtctgtgttcagtattacctgtcactcaccttctat
ctgttacataagctgacagatgctgaatctacagtcaaacagtgtgtcctaactctgggg
aagaagacgagacgtctgaccgttgccagtggtcctgtatccaggacggtcagtgttcta
aaagccaggatcctatttcacactgggactcccagctccctccagacagccctaaccctc
acccaggagctgtgtactgaaatgtcaagtcatacagttttatctctgcaagggcatatt
ttgctgaagttgaacagagtagaggaaacagaggagataattggtaagctggatgatggt
gagaatagaatggccttggagggacatgtcaagttttatcaggcagaattcaccaagtca
gctgtcatattttgtgagctgatcaagaaggtcagtacaagcagtgagtaccacctgatg
tatgccaagtctctgtggtacgacaaaaattcactgtcaaacaacctccaaacgtgctac
actgctctactaaagtctgccaaacttgacccctacagcagtgagccgtttgagtacttg
gggaggttttacactgagatacagaaagacaaggggaaaggaaagcgctgctatcagaaa
gcgttcgacctggacaggaataatgacaaagctggcgaggcactatgtgatctaatgaca
gagctgggggaagaggaggatgcctatcaattgttattgtctgtgacaagcagtgccagt
gctgggtgctgtaagtgggcgtggctgagattgggtcttcaccaagtcaaacacgacaca
atatcagcggccatctccagcttccagtcggctctgagggccgatcctaaagacccgcat
gtgtttgagtgtttggctgaggcctactataagagaggaagttacactgctgccctcaag
gccttcaaaaaagcttcagagttgaatccgaaatctttgtacagcctgttcatgattgct
tgcattaagcagaccttaagggtgctgagtgaggctgtagataattacaagcatatactg
gagggctcccccaattacgtaccagctctgaaaggtctcggggagacgtatgtactgcag
gccaagcatcacctctctcagggctttaatgggcgtgccaagctgaactgtcaggatgct
cttcaatgtcttactagggcagtgtgccacaggcctgatttgtcctgcctctggaagttg
atgggtgactcctgcacaatcattcaccccctcccaacaaaaaacttcagttttgtagtg
cctgaaaatttgtacaaatccaaagactcagaaaacagttgtgaactcaacttacaacag
actctacagcttggagccaggtgctatgggagagctctaaagctgttaccggaatgtgct
cagctgtggcatgatctggggttcaatctgtatcagcagagcctgcactcggaggatgag
aatgcagtgggtgtggccgagaagtcagcagaggcccttaagaaggggttgtccctggag
cctgccaatcatcagatctggaacacactcggacttgtttattgtcactcgggtctgaat
agacaatcacttgggcagcactgttttatcaagtctatacaagcagaatctgaaaatgtg
gtggcatggacaaacctagcaacactttatcttgaaaaaggaaacatacagttagctcat
gaagctttcaaaaaggcccagagtttggacccaaactatgtgtcttgttggattggtcag
gccatgattgcagaaacagtgggagatgatgatgctatggatttgttccgacacactaca
gagttatctccccatgttgagggttccatggggtacgcccactgggtgtgtaccttacac
aaggacaaagccaagcacagcaccgagatgtaccgctacgccattcaccagatggcggcc
attccggccgcctccgacgctctggccagatatctggaccttgtgaagacaaacccttgt
gcatacaacatgtatgggctgctgatggaacaacaggaactttacagatcagcaaagacg
gccttcatcaggtctattaatctactggagccgagtgacattctcctgaaccacgtcaaa
ctcaacctggccagggtactgtgcaagcttggggactactctggtgctgtgactctgtat
acaaagtttggagaactggactctctgcaggacctgtgtcacatgggcctggccttttac
aagtctcagcaatacacagaaagctaccaagcttatgacaaagccctagaggtcagcacc
aatgacacagatagttcacagattcacgctgctttggggatggtggcttataagtttgga
gacgtagatggagccaaagcttctctctttcaaagttcacaactgcagcctgcctctcgc
catggacttgaggctctttgtgcccttggtctgaagtgtcgcgatgtgaccttgacccat
gctgtccttcaggaactggtcgggacagagatggacaactctggaatatatttcactgtc
cttcaacatggtcttctagaagaaaactgggagcttgcaaaatcattcttagaaaaatgt
atccactggtttccagataaagatacactctggaggcttttatcaaggttacagctcaga
catcaccatggtaacaaaccctccactgcagcgatgtgtatgcaggcagcgatgagtctg
gagcccaagtgtcaggaattgatgacagaggtcgccatgggacaactactggacggcaaa
catgtgtcaaaggacaccaaaaataacgccttactgagtgcacaaagagcattgctcatc
aacccaggtaaattaggcaactggtgctctctggtctcctctgttcactgtcaatcagag
ctggaggcggagtctgagcgagttcaggctctccacaagatagagacccgctacttgaca
tggctgatgtcagcagaagagttatccgaagacttgagaacttggtgtgtaaaacagctg
actgctgctcagttactctcaggggaaagaactctggaatctctaagtggtgaattgaag
gaatatattgcaaatctacttcaagataaatcattacaatccagtgatgtacaacatgtc
ttcagtctgtacaagactctgctgaatgatggaggaaatgatgaagttaacaagaccttc
tccagactgacagatgatctgataaagaagacctcttcaccagaccccctcataatgctg
atgagagctatcatcctgatgaagactaacccaaaactggccaagcatcgactggtggat
gttctgattgccgtcaggtcagagcgcccccagcctctactcctcccctccgtctccagg
agatgtctgctcagcatcctgcgggaaagtccagacaaagacgtggaactcatccagctg
attctgacagaggcagaaaatgatggcgatgatgaaacagtgaacttttatcagcagttt
atcaaagacgcttga
DBGET
integrated database retrieval system
