Crassostrea gigas (Pacific oyster): 105345292
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Entry
105345292 CDS
T03920
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03022
Basal transcription factors
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105345292
09124 Replication and repair
03420 Nucleotide excision repair
105345292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105345292
03400 DNA repair and recombination proteins [BR:
crg03400
]
105345292
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105345292
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105345292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
AC_N
DZR
Motif
Other DBs
NCBI-GeneID:
105345292
NCBI-ProteinID:
XP_011451698
UniProt:
K1RAW7
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All DBs
Position
LG6:complement(27683272..27691039)
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AA seq
399 aa
AA seq
DB search
MAEEEEKGYRWETEYERTWEAIQEDEKGSLQASVDDIISKAKKRKLLEKIKNVRLGMMRH
LFLIIDMSEAMSDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIIITKNKRAEKVSEL
GGNPRRHITTLQSLADKVCHGEPSLQNSLELAHQTLRHMPGHASREVLVVMGSLTTCDPD
NIISTISMLRDGNVRCSVIGLAAEVCVCKKLCKETHGSYSVILDECHFKDLLTQHVTPPP
ATASTESSLIRMGFPHHQLSADKEERPSMCMCHLDSKNSQGFSSTGYFCPQCKSKYCELP
IECKACGLTLVSAPHLARSYHHLFPLDQFREIPTAQVGSNVLCFSCQTAVQELNVYICDN
CERIYCLDCDLFIHETLHSCPGCASSRQTQQSAKMAGFS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaagaagagaaaggatacagatgggaaacagaatatgaacgcacttgggaa
gcaattcaagaagatgaaaaagggtcgcttcaggccagtgttgatgatatcatcagcaaa
gctaagaagagaaaactcttggagaaaatcaagaatgttcggcttggtatgatgaggcac
ttattcctgattattgacatgtcagaagctatgagcgaccaggatctgaaacccactcgt
ctactttcaacactgaaacttttggaatactttgttgaagagtattttgatcaaaaccct
ataagtcaacttggtatcatcattacaaagaacaaaagggcagagaaagtctctgagctt
ggaggcaaccctaggagacatattacaactttacaaagtcttgctgataaagtgtgtcat
ggtgaaccgtctctacagaattcattagaacttgctcaccaaactctcaggcacatgcca
gggcatgccagtagagaagttttagttgttatgggcagtttgacaacctgtgacccagac
aacatcatcagcaccatctctatgctgagggatggtaatgtcagatgctctgtcattggt
ctagcagctgaagtctgtgtctgtaaaaagctttgcaaagaaacacatggtagctacagt
gttatattggatgaatgccacttcaaagatctcctcactcaacacgtcaccccaccaccc
gccactgctagtacagaatcttcactcattagaatgggttttcctcatcatcagctgagt
gcagacaaggaggagagaccatccatgtgtatgtgtcacctggacagtaaaaacagccag
gggttcagtagtacaggctacttctgtccccagtgtaagagtaaatactgcgagctgccc
atcgagtgcaaggcctgcggcctgactctggtatcggcccctcatctcgctcgctcctat
catcacctcttcccactggatcagttccgggaaatacctacagctcaagtaggatccaat
gtattatgtttttcttgtcaaacagctgttcaagaactcaatgtatacatatgtgacaac
tgtgagcgtatttattgtttggactgtgatctctttatacacgagactttacactcctgt
ccggggtgtgctagctcacgacagactcaacagtcagccaagatggctggcttctcttga
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