Magallana gigas (Pacific oyster): 105345480
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Entry
105345480 CDS
T03920
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105345480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105345480
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105345480
Spliceosome [BR:
crg03041
]
Complex A
U2 snRNP components
U2 related factors
105345480
Complex B
105345480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
RSRP
Motif
Other DBs
NCBI-GeneID:
105345480
NCBI-ProteinID:
XP_011451912
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All DBs
Position
LG10:complement(53614522..53629887)
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AA seq
993 aa
AA seq
DB search
MPREGRSYRRRSRSRSDSRERERKRRSRSRSRPRRSRSRDRPRRSRSRERKRSRSRERRR
SRSRERRRSRSRDRRRSKRSRSRDRKKSRSKTPDKKKRSVSPEAKKLTHREGEITVKDEP
LDKEEEQKRLEMEMQKRRERIEHWRAERKKKQELIPINIAPVSKKWSLEDEDDDDEEEVQ
EKSEENGDEVDPLDAYMQDITSEVKPKDKEKPNGEGLQSTGKVTIITAVARKKVQPEKDK
GELMENNVDLMEYSSEEEEEDLESTMLNMNKKKKDTIVVNHDKIYYASFRKNFYVEVPEI
ARMTTEEVEAYRTELEGIKVRGKNCPKPIKSWAQCGCSKKVMDVFRKNSFEKPTPIQSQA
IPAIMSGRDLIGIAKTGSGKTLAFLIPLFRHIMDQPPLDENDGPIAIIMTPTRELAMQIT
SECKKFTKPLGLKAVCVYGGTGISEQIAELKRGCEIIVCTPGRMIDMLSANNGRVTNLRR
CTYVVLDEADRMFDMGFEPQVTKIVDSIRPDRQTVMFSATFPRQMEALARKILQKPIEVQ
VGGRSVVCRDVDQSVIVIDEDKKFLKLLELLGLYQEKGSVLVFVDKQEHADELMKELMTH
SYPCMSLHGGIDQYDRDSIIVDFKNGNVKLLVATSVAARGLDVKHLILVVNYDCPNHYED
YVHRCGRTGRAGNKGYAFTFITPEQERYAGDIIKALELSGATVNADLEKLWNDYKERAKA
EGKTVKSSSGFLGKGFKFDETEAQLANERKKLQKAALGLQDSDDEDTGVDIDQQIEDMFA
SVKRVTDIAKPQVISNPMAGIGALPTGQSNQQKLALAKQLAAKINMAKKIGPDARDITQQ
AAKFILSDEGFAPKVASKTIAEQTAEKINAKLGYRPPSEDEEGENSNAETFKRYEEELEI
NDFPQTARWKVTSKEALAQICEYSEAGITVRGTYFPPNKEPKEGERKLYLAIEATSDMAI
QKAKKEITRLIKDELIRLQNSYQPINKGRYKVL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggagggaaggtcttacagaagaagatcacgttcgcgaagtgattctcgtgag
cgggagagaaaaagaagaagtcgctccagaagtagaccaagaagatccaggtctcgagat
cgaccacgaagatccagatcaagagaaaggaagcgttctcgatctcgtgaaagaagaaga
tcaaggtctagggaaagaagaaggtcaaggtcacgggacaggagaaggtctaagagatct
cgatcaagagataggaaaaagtctagatccaaaacgccagataagaagaagcgcagtgtt
tcaccagaggccaagaaactgacacatagagagggagagatcaccgttaaagatgaaccc
cttgacaaggaggaagaacagaaaagattggagatggagatgcagaagaggcgagagcga
atcgagcactggcgagcggagcggaagaagaaacaggagttgatcccgatcaacatcgcc
ccggtcagtaagaagtggtcactggaggatgaagacgatgatgatgaagaggaggttcag
gagaagagcgaggagaatggtgatgaagtggaccccctggatgcctacatgcaggacatc
acttctgaggtcaaaccgaaagacaaagagaaaccaaatggggagggattgcagagtaca
ggaaaagtgaccatcatcaccgctgtggccaggaagaaggttcagccggagaaagataaa
ggggagctgatggagaataatgtggacctgatggagtactcatcagaggaagaagaggaa
gatttggagtccaccatgttgaacatgaacaagaagaaaaaggacaccattgtggtgaac
cacgacaagatctactatgcttcattcagaaagaacttctatgtcgaggttcctgaaatt
gccaggatgaccactgaagaggtggaggcgtacagaactgaactggaaggaatcaaggtc
cgaggaaagaactgtcccaaacctatcaagtcctgggcccagtgtggctgcagcaagaaa
gttatggatgtctttagaaaaaacagttttgagaagccaactccaatccaaagtcaggcg
attcctgccatcatgtcgggcagggacctaataggaatcgccaagacaggaagtgggaaa
accctggccttcctgatcccgctgttccgccacataatggatcagcctcccctggatgaa
aatgatggaccgatagccatcataatgacccccaccagagaacttgccatgcagataact
tcagagtgtaagaagtttaccaaacctctgggactgaaggctgtgtgtgtgtacggggga
acaggaatatcagagcagatcgcggagttaaagcgcggctgtgaaatcatcgtgtgtacc
ccagggcggatgattgacatgttgtccgccaataacggtcgagtgaccaacttacggagg
tgtacatatgttgtgcttgatgaagctgatagaatgtttgacatgggctttgaaccacag
gtgactaagatagtggacagtatacgacctgacagacagaccgtcatgttctcggccacc
tttccccgccagatggaggctctagctaggaagattctacaaaagccaatcgaagtgcag
gttggaggtcgcagcgttgtctgtagagacgttgatcagagtgtgatcgtgatagatgaa
gacaagaagtttctgaagctgctggagttactggggctgtaccaggagaagggcagcgtc
ctggtgttcgttgacaagcaggagcatgcggacgagttgatgaaggagttaatgacccac
tcctacccctgcatgtcgctccacggcggcatcgaccagtacgacagggacagcatcatc
gtcgacttcaagaatggtaacgtcaaactgctggtagcgacctctgtggcggcccggggg
ctggacgtcaagcaccttatcctggtggtcaactacgactgtccaaaccactacgaggac
tacgtccacagatgtggacgtacaggaagagctgggaacaagggttatgcctttactttt
ataactcctgaacaagagaggtatgcaggggacataatcaaggcccttgaactgtcggga
gccactgtgaatgcagacctggaaaagctgtggaatgactacaaggagagagcaaaggct
gagggtaaaacagtgaaaagttccagtggcttccttgggaaaggattcaagtttgatgaa
acagaggcacagctggccaatgagagaaagaagctacagaaagctgccctcggacttcag
gactcggatgatgaggacactggtgtcgatattgatcagcagattgaggacatgtttgcc
agcgtgaagcgagtcacagacatagctaaacctcaggttatctcaaaccccatggcgggg
atcggtgctcttcccacagggcagtccaatcaacagaaactggcacttgccaagcaactc
gctgccaaaatcaacatggccaagaaaattggtccagatgcaagggacatcactcagcaa
gctgctaagtttatactgtctgatgaaggatttgcaccaaaagttgcatcaaagacaata
gcagaacaaacggcagagaagattaacgccaagctaggctaccgacctccctctgaagat
gaagagggtgaaaacagtaacgcggagacgttcaaacgttacgaagaggaactggaaata
aacgacttcccacaaacagcccgatggaaggtcacctcaaaggaggccctggcacagatc
tgtgagtactcggaggctggtatcaccgtgaggggcacctacttcccacccaacaaggag
ccaaaggagggcgagaggaagctgtacctggccattgaggccaccagtgacatggccata
cagaaagctaagaaggaaatcacacgcctcatcaaggatgaacttatacgactgcaaaac
tcctaccaaccaatcaacaaagggcgatacaaggttttgtag
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