Chryseobacterium rhizoplanae: KB553_12850
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Entry
KB553_12850 CDS
T08349
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KB553_12850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crhi03400
]
KB553_12850 (ligD)
Enzymes [BR:
crhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KB553_12850 (ligD)
DNA repair and recombination proteins [BR:
crhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KB553_12850 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UCA57944
LinkDB
All DBs
Position
2849843..2851711
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AA seq
622 aa
AA seq
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MLAKPFDKAFDDKDWLFEIKWDGYRAIADLSHDDPLFYSRNGISFLSKFDKVTQDFGQQK
YKMVLDGEIVAYDDQGKPSFQLLQQIGDNPNLALVYQVFDLLWLNGHSTEELPLIQRKEL
LKEALTETDTIKYCDHIPEKGIAFFEQMKEMKLEGMIAKRADSQYIENYRTTDWLKIKFS
NTEEAIICGFTEPRGSRENFGALILGKYVNNELIYCGHTGTGFNHTSLNQLYQRLEKMII
KSSPFETIPKTNMPVTWVKPELVCEIKYSEITKDGIFRHPVFVGIREDKEPEEVKETADL
TIQPIKNKTMKAKKEHSEKEQEIILNRHAVKLTNQDKIYFPKDGITKGDVIDYYQSVAEY
ILPYLKNRPLSLNRFPNGIEEQGFYQKDAGDHIPDWVKTTQVYSESNDKYIDYIYCNDKA
TLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQVNEVLQSIKM
KGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVHEKLPEITTLERSLQKRDSNKI
YLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWDELKPGLLPTDYNIENALKRIKEKGDL
FKPVLGKGIDMMKALELLQSID
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaacctttcgataaagcatttgatgataaagactggctttttgaaataaaa
tgggacggctacagagctattgctgatctgagccatgatgaccctcttttctattcaagg
aacggaatctcatttctgtccaaattcgataaagtaactcaggacttcggccagcaaaaa
tataaaatggtcctggatggggaaattgtagcgtatgacgatcagggaaagcccagtttt
cagcttttacaacaaataggagataatcctaatcttgctctggtttatcaggtttttgac
cttctatggctcaatggccattctacagaagaacttccgcttattcaacggaaagagctt
ttaaaagaagctttaactgaaacggataccattaaatactgtgatcatattcctgaaaaa
ggtattgcatttttcgagcagatgaaagagatgaagctggaaggtatgatcgctaaacgg
gcagacagccaatatatagaaaattaccgtactacagactggcttaaaatcaagttttcc
aatacggaagaagctattatctgtggctttactgagcccagaggttcgcgggaaaatttc
ggagctttgattcttggaaaatatgtgaataatgaattgatttattgtgggcatacagga
acaggattcaatcacacctccctaaatcagctttatcaaagacttgagaagatgatcata
aaatcttctccgtttgaaaccattcccaaaaccaatatgcctgtaacatgggtaaagcca
gaactggtttgcgaaatcaagtactcagaaattaccaaagacggcattttccgccaccct
gtttttgttggcatccgtgaagataaagaaccggaagaagtaaaggaaacggcggatctg
actattcaacctataaaaaacaagacaatgaaagctaaaaaagaacattcagaaaaagaa
caggaaattattctcaacaggcatgctgtgaaactgaccaatcaggataaaatatatttt
ccaaaagatggaattactaaaggggatgtaatagattattatcagtcagtagcggaatat
atcctgccatacctgaaaaaccgccctttatctctgaaccgttttcctaatggtattgaa
gaacaaggcttttaccagaaagatgcaggagatcatattcccgactgggtaaagacaacg
caggtttactctgaatccaacgataaatatattgattatatctactgcaatgacaaggct
actttagcttacctgaataatctcggatgtattgaccttaatccatggaacagctctctt
ccggaccttgaacatcctgattacctggttttggatcttgatccgtcaaagaaaaatact
tttgatgatgtgattgaaacggctcttcaggtaaatgaggtattacaaagtattaaaatg
aaaggatattgtaagacttccggaagcactggaattcatatttatattccgatgggtgga
aagtacgattttgatcaggtaaaagacttcgcccatatcctgatgaaacaggtccatgaa
aaactccctgaaattacaactctggaaagaagccttcaaaaaagagattccaacaaaatc
tatcttgattatctgcaaaacagaaccgggcaaacgctggcaagtgcttacagtttgcga
cctaaacaaggtgcttctgtttctatgcctttagattgggatgaactgaaaccgggactt
ttgcctacagattacaatattgaaaatgcattaaaaagaattaaagaaaaaggagacctc
tttaaacctgttctaggtaagggaattgatatgatgaaagcactggaattacttcagagt
attgattaa
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