Chryseobacterium rhizoplanae: KB553_17385
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Entry
KB553_17385 CDS
T08349
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KB553_17385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crhi03400
]
KB553_17385 (mfd)
Enzymes [BR:
crhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KB553_17385 (mfd)
DNA repair and recombination proteins [BR:
crhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KB553_17385 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Latarcin
Choline_kin_N
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
UCA58813
LinkDB
All DBs
Position
3843504..3846872
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLMQKEFGKEIFTQLENSQHIAVKGSAGSSVSVFVAELFLVQKKNILY
LVDDKEDALYANSEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQTDFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGS
RVSLLQLLPKESYVISKNGMIGMQKIRTFYEKSLEKYETLSKDIAHRTPQELFISDQEFL
FDYKKFKTVDFGNVAIEGLKEVAEVKMEQLPQPSFHKNFELLIEDIEEKQKIGFDTWISF
STEKQKERLESIFKELEHELPFKSFKSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGKEIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATVDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKSETLEDLKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFSEEILRDAISYEIQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMDGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEINNEKDLHQFELELIDRFGA
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGIFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKEGNQLMMRKEKVKNVDEVNILLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaacgaaaagtttcttccggaccttatgcagaaagagttcggg
aaagaaatttttacccagttagaaaatagtcagcatattgccgtgaagggaagtgcggga
tcttcagtttctgtttttgtggctgagctctttttggttcagaaaaaaaatattctttat
ctggtagatgataaagaggatgcattatatgcgaattccgaaatggaagacctgcttggg
aaagaaaaagtattgtacttcccagctactcacctggaaccttatcaggtggagaaaact
cagaatgctaaccttgtattaagaactgaggtactgaataaaatcaattccgggagatct
ccgaaagtgattgttgcctatgcaggagcactgtcggaaaaggtactgaagaaagaagat
ttcaaagcgatttctcatcacataaaagtaggtgatcagctggattttgattttgtggat
gaactgcttaatcattatcattttcagcaaacagactttgtctcagagcctggagagttt
tctgtaagaggaggaattgtagatgtattttcttattcttatgaaaagccgtacaggatc
acattctttggtaacgaggtggaaagtattaaaacatttgacatagaaactcagctttca
gtagataaggtaaaagatttccagctggtatccaatatgaatttctcagtaacaggaagc
agggtttcattgctgcagctgttgcctaaagaaagttatgtgatttccaaaaacggaatg
atagggatgcagaagatcagaacgttctatgaaaaatcccttgaaaaatatgaaacttta
agtaaagatattgctcatagaactccacaggagctttttatttccgaccaggagtttttg
tttgattataaaaaatttaaaaccgttgatttcgggaatgttgctatagaaggattgaaa
gaagtagctgaagtaaaaatggagcagcttccacagccttcttttcataaaaattttgag
cttctcattgaagatattgaagaaaaacaaaaaattggattcgatacctggatttctttc
tctacagaaaaacagaaagaaagactggaatctatctttaaagaacttgaacatgaactt
ccttttaaaagctttaaatctgaactgcatgagggttttgtagataacggccataagctg
ttggtatatactgatcatcagatttttgaccgttatcagagatataaggctaaaaatacc
tttgcaaaatctgaacagcttactctgaaagacctgatgagcctcaagattggagattat
attgcccatattgatcatggaattggaaaatttatgggattggtaaaggtgaataatgac
gggaaaatccaggaatgttttaaactgacttataaaaacggagatctgctgtatgtaagt
attcattcactacataaaatctcaaaatataacggaccggatggaaaagagattgtgctg
agcaagcttggctctccaacctggaaatcattaaagcaaaaaacaaaggctaaggttaag
cagatagcatttgatcttattaaattatacgctcaaagaaaaacggcaaaagggtttgct
tatactccagactcttacctgcaaaatgagttggaagcaagctttatttacgaagatacc
ccggaccaggaaaaagctaccgtagatgtaaaaaaagatatggaagcggatacggtgatg
gacagattggtttgtggagatgtagggttcggtaaaacagaggtggcaatacgtgccgca
tttaaggctgcaacagatggaaaacaagtggcagtactggttcctactactattctggcg
ttccagcattacagaagttttaaggaaagacttaaagattttcccgtaaatgtttcttat
gtgaacagattcagaacggccaagcagaaatccgaaacattagaggatctgaaaaacggg
aaggtagatattattatcgggacccatcagttggtaagcagctcggttaaattcaaagat
cttggattattgattattgatgaggaacacaagttcggcgtttccgtgaaagataaactg
aaaactcttaaaaacaatgtggatacgcttacactaacagcaactccaattccaaggaca
ttacagttttctttaatggcagcaagagatttgtctgtaattaaaactccgccgcctaac
aggcagccggtagatacacagctaatagggttcagtgaagaaatacttcgtgatgctatt
tcttatgagatccagagagatgggcaggtgtattttatcaataacagaattgaaaacctg
aaagatattgccgggcttattcagcgtctggttcctgatgcaagagtgattacgggacac
ggtcagatggatggtaagcagctggagaaaaatgttctggactttatggaaggtaaatat
gatgtacttgtttctaccactattgtagaaagtggagtggatgttccgaatgcgaatacg
atctttatcaatgatgctcaaagattcgggatggcagatctccaccagatgaggggaaga
gtaggacgaagcaacaggaaggctttctgctaccttattactccaccttatgatatgatg
acttctgatgccagaaaacgcctggaggcaattgaacagttttctgaccttggaagcggt
ttccagattgcaatgaaagaccttgagatccgtggtgcgggagatttattgggagcagag
cagagcggttttattaatgagatgggatttgaaacctatcagaaattaatgcaggaggca
cttgaagagctgaaagacgatgctgattttgagaatttattcgaaaatgaagaggacagg
caaaagcttttcaaatctgtaaaagatgttaatattgatacggatctggaactgatgctg
cctgatttctatatttctaatacggaagaaagattgctgctgtatcagaaaatagcagaa
attaataatgaaaaagatcttcatcagtttgaacttgaactgattgacagatttggtgct
ttacctaaagaggcggtaaatctgcttaaaagtgtttccttaaaatggcttgcagcagat
attggctttgagaagattgtgatgaagaatggaatatttttagggtatttccctggcaat
cctcaggataaattctatcagacagacagattcaggcatattatcaattatttaaccaga
aatcctgcagaagctcagctcaaggagaagtcaggtaaggaaggaaaccaactcatgatg
agaaaagagaaagtgaaaaatgtagatgaggttaatattttactaaaagctattattgaa
cataattaa
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