Paracrocinitomix mangrovi: K6119_09385
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Entry
K6119_09385 CDS
T07876
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crm
Paracrocinitomix mangrovi
Pathway
crm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6119_09385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crm03400
]
K6119_09385 (mfd)
Enzymes [BR:
crm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6119_09385 (mfd)
DNA repair and recombination proteins [BR:
crm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K6119_09385 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKN03702
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All DBs
Position
2063348..2066770
Genome browser
AA seq
1140 aa
AA seq
DB search
MTLQEFRESFQQTEKVRDISAQLVYDETKISLKGLEGSGRAIVADSVIQNHKGFHLFILS
DKEEAAFFFSDLQNLNKNAQNIFFYPHSYKAPYQFEEIDNANVVSRAEVMDRVNRGNNSV
IVTYPQALFEKVITKKQFAQNIMEIKRGVEYSIDFINELLIEHGFEKVDFVYEPGQFAVR
GGIVDIFSFSNDEPYRVEFFGDEVESIRTFNPVNQLSIKSLTRFSVVPNIQKHKSEEKRE
TFLEFVPGKTVVWIKDYKSIKGTLDEEYKKAKEIYDNLPESAVTYSPPIDLYFEKNLFEE
QIKDYRVIEFGTNDYFAGTSSVVEKTSETNLKVTFNQKVQPAFNKNFELLIKDLTEKKQA
RYENFIISSQNKQIERIYSIFEDLESSVSFITINIALSEGFIDNDLNYTCYTDHQIFERY
HRFRLKEGYRKNQQALTLKEIYNLQKGDFVTHVDHGVGQFSGLELIDVNGKPQEAIRLVY
KDNDVLYVSIHSLHRISKFTGKDGTQPKLNKIGSPVWNNAKNKTKAKVKEIAYDLIKLYA
QRKAEKGFAFSPDNYLQNELEASFIYEDTPDQLKATVAVKEDMESESPMDRLVCGDVGFG
KTEIAIRAAFKAVCDSKQVAVLVPTTILSLQHYKTFKKRLEGFPCKVDYVNRFRSQKQIT
QSLKDLKDGVTDIIIGTHKLVGKKTEFKDLGLIIIDEEQKFGVGTKDKLKLFKASVDTLT
LTATPIPRTLQFSLMGARDLSTINTPPPNRQPVDTEIIGLNEEIIRDAVSYEVQRGGQVY
FVHNRVQNIHEVAGMIQRLCPGVRIGIGHGQMDGKKLEQIMVGFMDGEYDVLVATTIIES
GIDVSNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLISPPMHLLPSDSRKRLEAV
AQFSDLGSGFNIAMRDLDIRGAGNLLGGEQSGFISEIGFEMYQKILNEAIKELKEEEFKH
LFVEDKSVDGQEFVEDCILETDLELLIPDTYVNQVAERLLLYQELDNVKNQEELDNYREG
LRDRFGEIPEVVEELILSIHLRWMAKAIGFEKLVIKGGKMLGYFVAKQTSPYYQSSIFTQ
VLSFIQTNPADVKMNERNEKLRLIYSNVKSITKAIENLQRIGVALPKFQPSEPEEDEDFE
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgcaggagttcagagaatcatttcaacagactgaaaaagtcagggatatctct
gcccaattggtttatgatgaaaccaaaatttcactcaaaggtctagaaggttcaggacgc
gcaattgttgcagatagcgtaattcaaaatcacaaaggattccatctttttatcttgtct
gacaaagaagaagctgctttcttttttagtgatttgcaaaacctcaacaaaaacgcccaa
aacatcttcttttaccctcactcttacaaagctccttatcaatttgaagagattgataat
gccaatgtggtgtcccgagctgaagtaatggatagagtgaacagaggaaataattctgta
attgtcacttacccgcaagcactttttgaaaaagtgatcaccaaaaaacagtttgcgcaa
aacatcatggagattaaacgcggggttgaatattcaattgattttatcaatgaactattg
attgaacacggctttgaaaaagttgactttgtttatgaaccgggacaatttgccgtgcga
ggaggaatagtcgacatcttctctttctctaatgacgagccatatcgtgtagagtttttt
ggagatgaagttgagtctattcgaacttttaatccggtgaatcaattgtccattaaatct
ttaacaagattttctgttgttccgaatattcaaaaacacaaaagcgaagaaaaaagagaa
acttttttggagtttgttccaggtaaaactgtggtttggatcaaagactacaaatctatc
aaaggaacccttgacgaagagtataaaaaagcaaaagagatatacgataatctgcctgaa
tctgcagtgacttacagcccgccgattgacttgtactttgaaaagaatttgtttgaagag
caaatcaaagattacagagttattgagtttgggaccaatgattatttcgcgggcacttcg
agtgtagtcgagaagacaagcgaaactaacctgaaagttacattcaatcaaaaagtacaa
cctgctttcaacaagaactttgaattattgataaaagatctgacagaaaaaaagcaggcc
agatacgagaactttatcatctcttcgcaaaacaaacaaattgaacgtatctattccatt
tttgaggatttggaatcgtctgtttcttttatcaccatcaacattgccttaagcgaagga
tttattgacaacgatctcaattatacctgttatacagatcaccaaatttttgagcgttac
cacagatttagactgaaagaaggttaccgtaaaaatcaacaagctttaaccttaaaggaa
atttacaatcttcaaaaaggagactttgtcacacatgttgatcatggtgtgggacagttt
tcaggcttggaattgatagatgtaaatggcaaacctcaggaagctatccgattggtgtat
aaagacaatgatgttttatacgtttctatccattcattgcaccgaatttcaaaattcaca
ggtaaagatggaacgcaacccaagttgaataaaattggatcgccggtttggaacaatgct
aaaaataaaaccaaggcaaaagttaaagaaattgcctacgatttaatcaaattatacgcc
caaagaaaagccgaaaaaggcttcgcattttcaccggataattatctacaaaatgaatta
gaagcttcatttatttatgaagatactcccgaccaattaaaggcaactgttgccgtaaaa
gaagacatggaatctgaatctccaatggacagattggtgtgtggagacgttggttttgga
aaaacggagattgcgatacgcgcagccttcaaagcggtgtgcgattccaagcaggtagcg
gttttggtaccaactacaattctttcattacagcattataaaacatttaagaaacgttta
gaaggctttccttgcaaggtagattacgtaaatcgcttccgttcgcaaaagcaaattacg
cagtcattaaaagatctcaaagatggtgttacagatatcattattgggacgcataaattg
gtgggcaaaaaaaccgaattcaaagatttgggattgatcattattgatgaagaacaaaaa
tttggagtaggcacaaaagacaaattaaaattgttcaaagcatctgttgatacattgaca
ttaactgccactccaattccaagaactttgcaattttctttgatgggagctagagatctt
tcaaccatcaatactccacctccgaatcgtcaaccggtagacacagaaatcattggttta
aatgaagaaattatccgtgatgcagtttcgtacgaagtgcaaagaggaggacaagtttac
tttgtgcacaatcgcgtacaaaacattcatgaagtagccggaatgattcaaaggttatgt
cccggagtgaggataggaattggtcatggtcaaatggacggtaaaaaactggagcaaata
atggttggtttcatggatggagaatatgacgttttggttgccactaccatcattgaatca
ggaattgatgtttcaaatgccaacaccatcatcattaaccaggcgcaaaactttggatta
agtgatttgcaccaaatgagaggtcgtgtggggcgttcaaataaaaaggcattttgttat
ttaatctcccctcctatgcacttgttgccttcagattcgagaaaaagattggaggcggtg
gctcagttctctgatttgggatctggctttaacattgccatgcgcgatttagacattcgt
ggtgcaggaaacttattgggcggagaacaatcaggatttatctcagaaattggttttgag
atgtatcaaaaaatcctgaatgaagccatcaaagaactcaaagaagaagaattcaagcat
ttgtttgttgaggacaaatcagttgacggacaagagtttgttgaagactgtatactagaa
actgatttagaattgttgattccggatacatacgttaatcaggtagcagaaaggttattg
ttgtatcaagagttggacaatgtcaaaaatcaagaagagttagacaattaccgtgaagga
ttaagagatcgttttggtgagattcctgaagtggtggaagagttaattctaagtattcat
ttaagatggatggccaaagctattggatttgaaaaactcgtgattaaaggaggaaaaatg
ctgggatatttcgtagccaaacaaacttcaccatattaccaaagcagcatttttacgcaa
gtgttgagctttatccaaaccaatccggctgatgtaaaaatgaacgaacgcaacgaaaaa
ttgcgtcttatttacagcaatgtaaaatccatcactaaagccattgaaaatctccaacga
attggcgtagcattgccaaaatttcagccttcagaaccggaggaagatgaggattttgaa
taa
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