Citrobacter rodentium: ROD_01021
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Entry
ROD_01021 CDS
T01145
Symbol
lpxC
Name
(GenBank) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
KO
K02535
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:
3.5.1.108
]
Organism
cro
Citrobacter rodentium
Pathway
cro00540
Lipopolysaccharide biosynthesis
cro01100
Metabolic pathways
Module
cro_M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
ROD_01021 (lpxC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
cro01005
]
ROD_01021 (lpxC)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.108 UDP-3-O-acyl-N-acetylglucosamine deacetylase
ROD_01021 (lpxC)
Lipopolysaccharide biosynthesis proteins [BR:
cro01005
]
Lipid A
ROD_01021 (lpxC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LpxC
Motif
Other DBs
NCBI-ProteinID:
CBG86882
UniProt:
D2TGN3
LinkDB
All DBs
Position
122374..123291
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AA seq
305 aa
AA seq
DB search
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT
MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVDAPEIPIMDGSAAPFVYLLLDAGI
EELSSAKKFVRIKETVRVEDGDKWAEFKPYNGFTLDFTIDFNHPAIDSSTQRYAMNFSAD
AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEFVTFEDDAELPLAFKAP
STVLA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaacaaaggacacttaaacgtatcgttcaggcgactggcgtcggtttgcatacc
ggcaagaaagtcaccctgaccttacgccctgcgccggccaacaccggggtcatctatcgt
cgcaccgacttgaatccaccggtagattttccggccgatgccaaatctgtgcgtgatacc
atgctctgtacgtgtctggtcaacgagcatgatgtacggatttcaaccgttgagcacctt
aacgctgctctggcgggcttaggtatcgataacatcgttattgaagtcgatgctccggaa
atcccgatcatggacggcagcgccgcgccgttcgtctacctgctgcttgacgcaggtatt
gaagaactgagcagcgcgaagaaatttgtccgcatcaaagagaccgttcgcgtcgaagat
ggcgacaagtgggctgagtttaaaccgtacaatggttttacgttggatttcaccatcgac
tttaaccatccggcaatcgactccagcactcagcgctatgcgatgaacttctcggctgat
gcgttcatgcgccagattagccgcgcacgtacgttcggtttcatgcgtgatatcgaatat
ctgcagtcccgtggcctgtgcctgggcggcagcttcgattgtgccatcgttgttgacgat
tatcgcgtactgaacgaagacggcctgcgttttgaagatgaattcgttcgtcacaaaatg
ctcgacgcgattggtgacttgttcatgtgtggtcacaacattattggcgcctttaccgcg
tacaaatccggtcatgcgctgaataacaaactgttgcaggctgttctggcaaaacaggaa
gcctgggaatttgtgaccttcgaagacgacgcagagctgccgctggcgttcaaagcacca
tcgaccgtactggcataa
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