Crossiella sp. CA-258035: N8J89_22765
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Entry
N8J89_22765 CDS
T09057
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cros
Crossiella sp. CA-258035
Pathway
cros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N8J89_22765 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cros03400
]
N8J89_22765 (ligD)
Enzymes [BR:
cros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N8J89_22765 (ligD)
DNA repair and recombination proteins [BR:
cros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N8J89_22765 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WHT15956
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All DBs
Position
4970480..4971907
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AA seq
475 aa
AA seq
DB search
MGDLTEYRRKRDPARTPEPVPGPGPLPRGQDDTFVIQEHHARRLHWDVRLERAGVLVSWA
VPKGLPTEPGVSRLAVHTEDHPLSYATFAGEIPRGEYGAGTMTIWDAGHYETIQWTRARV
EVVLHGRRANGRYLFSRKGENWMVHRLDAPENPDWLPLPEAVPPMLATPGTLPPAEQDEL
WSYEFKWDGVRAIARVDGGRLTLHSRAGGEITATYPEIRGLGDQLGSTQTLLDGEIVAFR
DGKPSFTALQRRMHVSDAATVRRLTESQPVHYLIFDLLHLDGQSTVDLRYAERRRLLDEL
ALSGPRWLTPPAYPGAGAAVLRAAQDAGLEGVLAKRRDSRYHPGHRGPDWIKITDLRTQE
VVIGGWRTGHGRREGLLGSLMLGIPAEGGLRYVGQVGTGFTQEMLRLLTRRLTALARKSS
PFLDPIPADRGRTTHWVTPSLVGEVAFREWTPEGKLRTPSWRGLRPDRRPEEITA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgatctcaccgagtaccgccgcaaacgggaccccgcccgcacccccgagccggtg
cccggacccggaccgctgccccgcggccaggacgacaccttcgtcatccaggaacaccac
gcccgccgcctgcactgggacgtccgcctcgaacgcgccggggtcctggtctcctgggcc
gtgcccaaaggactgcccaccgaacccggggtgtcccgcctggccgtgcacaccgaggac
cacccgctctcctacgccaccttcgccggggagatcccgcgcggggagtacggcgcgggc
accatgaccatctgggacgccgggcactacgagaccatccagtggaccagggccagggtc
gaggtcgtcctgcacggccggcgcgccaacggccggtacctgttctcccgcaagggcgag
aactggatggtgcaccgcctggacgccccggagaaccccgactggctcccgctgcccgaa
gccgtcccacccatgctcgccacccccggcaccctgcccccggccgagcaggacgagctg
tggtcgtatgagttcaagtgggacggggtccgcgcgatcgcccgcgtcgacggcggccgc
ctcaccctgcactcccgggcgggcggcgagatcaccgccacctacccggagatccgcggc
ctcggcgaccagctcggcagcacccagaccctcctcgacggcgagatcgtggccttccgc
gacggcaaacccagcttcaccgccctgcaacgccgcatgcacgtcagcgacgccgccacc
gtgcgccgcctcaccgagtcccagccggtgcactacctcatcttcgacctgctgcacctc
gacggacagtccacagtggacttgcgctacgccgagcgccgccgcctgctcgacgagctc
gccctcagcggcccccgctggctcaccccaccggcctaccccggcgccggcgccgccgtg
ctgcgcgccgcccaggacgccggcctggaaggcgtgctcgccaaacgccgggactcccgc
taccaccccggccaccgcggccccgactggatcaagatcaccgacctgcgcacccaggag
gtcgtcatcggcggctggcgcaccggccacggccgccgcgaaggcctgctcggctccctc
atgctcggcatccccgccgagggcggcctgcgctacgtcggccaggtcggcaccggcttc
acccaggagatgctgcgcctgctcacccgccgcctgaccgcgctggcccgcaagagctcc
cccttcctcgacccgatccccgccgaccgcggccgcaccacgcactgggtcaccccgtcc
ctggtcggcgaggtcgccttccgggagtggacaccggaggggaagctgcgcacgccctcc
tggcgcggcttgcggccagatcgccgcccagaggagatcacggcctag
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