Crossiella sp. CA-258035: N8J89_37510
Help
Entry
N8J89_37510 CDS
T09057
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cros
Crossiella sp. CA-258035
Pathway
cros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N8J89_37510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cros03400
]
N8J89_37510 (mfd)
Enzymes [BR:
cros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N8J89_37510 (mfd)
DNA repair and recombination proteins [BR:
cros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N8J89_37510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
Glyco_tran_WecG
DUF1474
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WHT18744
LinkDB
All DBs
Position
complement(8309096..8312710)
Genome browser
AA seq
1204 aa
AA seq
DB search
MTTSAPLAGLLTAATTSEAMRRVVTSVGAHDLELEGPSSARPLVVATLAAPAPVGAGRMV
LVITATGREAEELGRALGDLLGQDTVAVFPSWETLPHERLSPRADTVGGRLSILRRLAHP
EEFGPLRVVVATVRSLIQPMAPGLGELEPVRLRVGSEHDFAELVERFVRLAYVRVDMVEK
RGEFAVRGGILDVFPPTAEHPVRLEFWGDEVTEIRAFAVADQRSLTDAVPELFAPPCREL
LITEQVRARAAGLVQEHTGDPQLAEMLEKIANGIPCEGMEALLPALLPGELELLTDVVPV
GTHVLVADPEKVRTRAHDLVRTGQEFLEASWMAAASGGKAPIDLGASAYRSLSEVAEHAR
DTGRPWWSLSQLTTDDVDGERRPIRLDIRQVEAYRGEVERAFADLRAHAASGGAAVLVVP
GTGTGQRACEQLSEAEVPCRWAEQGLPEAPPPGLVTVVRGALEDGFVLTDPALVVLTETD
LTGGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVRRTVQGATREY
LVLEYASSKRGQPGDRLFVPTDQLDDVSRYVGGELPALNKLGGSDWKATKAKARKAVKQI
AAELVQLYAARQSAPGHAFGEDTPWQRELEDAFPFTETPDQMAAIDEVKADMRRAVPMDR
VICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLGQQHLNTFTERMRAFPVTVKGMS
RFTDTMEAEKVLTGLADGSVDIVIGTHRLLQKNVRYKDLGLVIVDEEQRFGVEHKEHIKS
LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAHNDKQVGAAIRR
ELLRDGQVFYVHNRVSTIEKAARKIRELVPEARVVTAHGQMNEDKLEKIIEGFWEKEYDV
LVCTTIVETGLDISNANTLIVERGDLLGLSQLHQLRGRVGRARERGYAYFLYPPESPLTE
QAHDRLATIAQNSELGSGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVD
AFRKHAGAGEGESEEAELADVRIELPVDAHIPHEYVPGERLRLEAYRKIAAAASGADLDA
VREELTDRYGPLPKAVEHLLAVSTLRQTCREHGVTEIALQGSQIRFAPMELRDSQTIRLK
RLYPKALYKPATRQVNVPRPTEGPAGGRMGAPPLRDRELLDWCAQFLHSLVGATPGTPVG
AGRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaccacctccgcgccgctcgccggcctgctcaccgccgccacgacctccgaggccatg
cgcagggtcgtcacctccgtcggcgcccacgacctggagctggagggcccatcctcggcc
cggccgctggtggtggccaccctggccgcgccggccccggtcggcgcgggccggatggtg
ctggtgatcaccgccaccggccgcgaggccgaggagctgggccgcgcgctcggcgacctg
ctcggccaggacaccgtggcggtcttcccgtcctgggagacgctgccgcacgaacggctc
tccccacgcgcggacaccgtcggcgggcggctgtccatcctgcgcaggctggcccacccc
gaggagttcgggccgctgcgggtggtggtggccaccgtgcgcagcctgatccagccgatg
gcccccggcctcggcgagctggagccggtgcggctgcgggtgggctccgagcacgacttc
gccgagctggtcgagcggttcgtccggctggcctacgtgcgggtggacatggtggagaag
cgcggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgccgaacac
ccggtgcggctggagttctggggcgatgaggtcaccgagatccgcgccttcgccgtggcc
gaccagcgctcgctgaccgacgcggtgccggagctgttcgccccgccctgccgggagctg
ctgatcaccgagcaggtgcgcgcccgcgcggccggcctggtgcaggagcacaccggcgac
ccgcagctggccgagatgctggagaagatcgccaacggcatcccgtgcgagggcatggag
gcgctgctgcccgcgctgctgcccggcgagctggagctgctcaccgacgtggtcccggtc
ggcacgcacgtgctggtggccgacccggagaaggtgcgcacccgcgcgcacgacctggtg
cgcaccggccaggagttcctggaggcctcctggatggccgcggccagcggcggcaaggcc
ccgatcgacctgggcgcctcggcctaccgcagcctgtccgaggtggccgagcacgcccgc
gacaccggccgcccgtggtggtcgctgagccagctcaccaccgacgacgtggacggcgag
cgccgccccatccggctggacatccggcaggtggaggcataccgcggcgaggtggagcgg
gccttcgccgacctgcgcgcgcacgccgccagcgggggagccgcggtgctcgtggtgccc
ggcaccggcaccggccagcgcgcctgcgaacagctcagcgaggccgaggtgccctgccgc
tgggccgagcagggcctgccggaggccccgccgcccggactggtcaccgtggtccgcggc
gcgctggaggacggcttcgtgctgaccgaccccgcgctggtggtgctcaccgagaccgac
ctcaccggcggccgcggcggcacctccaccaaggacatgcgccggatgccctcccgccgc
cgcaacgccgtcgacccgttggcgctcaaggcaggcgacttcgtggtgcacgagcagcac
ggcatcggcaagtacgtggagatggtgcggcgcaccgtgcagggcgccacccgcgagtac
ctggtgctggagtacgcctccagcaagcgcggccagccgggcgaccggctgttcgtgccc
accgaccagctcgacgacgtctcccgctacgtcggcggcgagctgcccgcgctgaacaag
ctcggcggctcggactggaaggcgaccaaggccaaggcgcgcaaggcggtcaagcagatc
gcggccgagctggtgcagctctacgcggcccggcagtccgcgcccggccacgccttcggc
gaggacaccccgtggcagcgggagctggaggacgccttcccgttcaccgagacccccgac
cagatggcggccatcgacgaggtcaaggcggacatgcggcgcgcggtgccgatggaccgg
gtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaag
gcggtgcaggacggcaagcaggtggtggtgctggtgcccaccacgctgctcggccagcag
cacctgaacaccttcaccgagcggatgcgcgccttcccggtcacggtcaagggcatgtcc
cgcttcaccgacacgatggaagcggagaaggtgctgaccgggctggccgacggcagcgtg
gacatcgtcatcggcacccaccggctgttgcagaagaacgtgcgctacaaggacctcggc
ctggtcatcgtcgatgaggagcagcgcttcggggtcgagcacaaggagcacatcaagtcc
ctgcgcacgcacgtggacgtgctcaccatgtcagccaccccgatcccgcgcacgctggag
atgagcctggccggcatccgcgagatgtccaccatcctcaccccgccggaggagcggcac
ccggtgctgacctacgtgggcgcgcacaacgacaagcaggtcggcgcggccatccggcgc
gagctgctgcgcgacggccaggtcttctacgtgcacaatcgggtcagcaccatcgagaag
gcggcgcgcaagatccgcgagctggtgccggaggccagggtggtcaccgcgcacgggcag
atgaacgaggacaagctggagaagatcatcgagggcttctgggagaaggagtacgacgtc
ctggtctgcaccaccatcgtggagaccggcctggacatctccaacgccaacaccctcatc
gtggagcgcggcgacctgctcggcctgtcccagctgcaccagctgcgcggccgggtgggc
cgggccagggaacgcggctacgcctacttcctctacccgccggagtccccgctcaccgag
caggcgcacgaccggctggccaccatcgcgcagaactccgagctgggctcgggcatggcg
gtggccatgaaggacctggagatccgcggcgcgggcaacatcctgggcgcggagcagtcc
gggcacatcgccggcgtcggcttcgacctctacgtgcggctggtcggcgaggcggtggac
gccttccgcaagcacgccggggcgggggagggcgagagcgaggaggccgagctggccgac
gtgcggatcgagctgccggtggacgcgcacatcccgcacgagtacgtgccgggcgagcgg
ctgcggctggaggcataccgcaagatcgccgcggcggccagcggcgccgacctggacgcg
gtccgcgaggagctgaccgaccgctacggcccgctgcccaaggcggtggagcacctgctg
gcggtctccacgctgcgccagacctgccgcgagcacggggtcaccgagatcgcgttgcag
ggcagccagatccggttcgcgccgatggagctgcgcgactcgcagaccatccggctcaag
cggctctaccccaaggcgctgtacaagccggccacccgtcaggtgaacgtgcccaggccg
accgagggaccggccggtggccggatgggcgcgccgccgctgcgcgaccgcgagctgctg
gactggtgcgcccagttcctgcacagcctcgtcggggccactccaggtacccccgttggg
gcgggaagggcctga
DBGET
integrated database retrieval system
