Caenorhabditis remanei (nematode): GCK72_003630
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Entry
GCK72_003630 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_003630
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_003630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_003630
03041 Spliceosome [BR:
crq03041
]
GCK72_003630
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
GCK72_003630
Spliceosome [BR:
crq03041
]
Complex C
Other components
EJC/TREX
GCK72_003630
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GCK72_003630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
9810902
NCBI-ProteinID:
XP_053588354
LinkDB
All DBs
Position
II:complement(100164..103369)
Genome browser
AA seq
666 aa
AA seq
DB search
MDEAIATRNFDDLRELFKAEKKLVKDDEFVLIKIDGLLKKRGYKIIELPSEQKEDFARQH
YHFVMSCMKLGYCSKSTPILTLQDLLEMSSIEECKQLFGLVEENMNEFKQPGFIETYQNT
ILRLCNDLLRRLSRTAETSFCGRIMFFLSRFLPLTEKSGVNFMGHFNTLNITNYEETETT
AESLLTAASSRRPTPVDGEEMETGEIEEDQAKEINVTSEMYRQFWSLQKFMSNPNLLYEK
DKFAMFKKDLSAVLSLMTANKLEKLNQEEESEYTENKQKKVSNDVFFTKYLTSPKLLALQ
LNDSSFRRYFLIQTIIIFQYLNAESRFKPPAKKMVLNEEQAKYVTDHEDKCYRLLSDTMP
RGAVFVAGLKKIIQREQEWNTWKNSNCPDLSEKADKGAMQMYKKRQRIPFNPQSLDLGTP
ELTKLWTNEPDVLQACKSDKRKFIPTLANFIRDPLDEMDPEQQVEEQYKSINDISFQWRA
ARLLMHKSPGYVSRTDIKSEPNSNMRDYLERNIYNAAKTIDEFKDGIAERERKEAESRKE
KEAEARRKVEESLKRKLDTKTVKKTDVVSSPNPYTDSPLSDENLHKLAQDLSKFSRKLAK
LLGVDDAKVQKSMTNSEEKEFCFRILKEWAEKNSRSGRSLLNLLIGDLDLIEVAQVTMKK
IHESNA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggcgatagcgactcgaaactttgacgacttgagggagcttttcaaagcagaa
aagaaacttgtaaaagacgacgaattcgtgttgataaaaatcgatggactactgaagaag
agaggatacaaaataatcgaattaccatcagaacagaaagaagatttcgccaggcaacac
tatcattttgttatgagttgtatgaaactgggttattgctccaaatccacaccgatcctg
acacttcaagatctcttggaaatgagctcaattgaggagtgcaaacagttgttcggactc
gttgaggagaatatgaatgagttcaaacagccgggattcattgaaacttaccaaaacact
attctccgtctttgtaatgatcttttacggcggttgagtcggacggctgaaacgtcgttt
tgtggaagaatcatgttctttttgtcaagatttctcccactaactgaaaagtctggagtc
aatttcatgggacacttcaacacactcaatatcaccaattatgaagagaccgaaaccact
gcagaatcactactcaccgccgcttcgtcacgacgtcctacaccggttgacggagaagaa
atggagacaggagaaatagaggaggatcaggcaaaagaaatcaacgtgacttcggaaatg
tatcgccaattctggtcgcttcaaaagttcatgtcaaatccaaatttattgtacgagaag
gacaagttcgcaatgtttaagaaggatttatcggctgttttatcactgatgactgccaat
aagttggagaaattgaatcaagaagaggagtcggaatacacggagaataaacagaaaaaa
gtgtcgaatgatgtgtttttcaccaaatatttgacatcgccaaagctcctggctcttcaa
ctaaacgattcatcattccgacgttattttcttattcaaacaatcataattttccagtat
ttgaatgcagagtccagattcaagccaccagcgaaaaaaatggtgctaaatgaagaacaa
gcaaagtatgtgacagatcacgaggataaatgctaccgcttgctatctgacacaatgcca
cgtggtgccgtatttgttgccggtttgaaaaagatcattcagagagaacaggagtggaac
acgtggaaaaactcgaattgtccagatttatcggaaaaagcggataaaggagcgatgcag
atgtacaagaaacgacaacgtattccattcaacccgcaatcactcgacttgggaacccct
gagctgacgaaactgtggacgaacgaaccagatgtgttgcaggcgtgtaaatcggataaa
aggaaattcattccaacacttgccaattttattcgtgatccactcgatgaaatggaccca
gaacaacaggttgaggagcaatataaatcaatcaacgacatttcattccaatggcgtgcc
gcccgtcttctaatgcacaaatctcctggatacgtgtcgagaaccgacataaaatccgaa
ccgaactcgaatatgagagattatttagagaggaatatatataatgcggcgaagacgatc
gacgagtttaaagatggaattgcagaaagagagagaaaagaggcggagtcacggaaagag
aaagaagcggaggcgagaaggaaagtggaggagtcgttgaagaggaagttggatacgaaa
acggttaaaaagacagacgtcgtttcatccccaaatccctacaccgattctccactttcc
gatgagaatctgcataaattggctcaagatctatcgaaattctctcgaaaactagcgaaa
cttctaggagtggacgatgcgaaagttcaaaagtcgatgacaaattcagaagagaaagag
ttttgcttcagaattcttaaagaatgggcggagaagaatagcagaagtgggaggagtctg
ctgaatttgttgattggtgatttagatttgatagaagtggcacaggtgaccatgaagaaa
atccatgagtccaacgcctga
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