KEGG   Caenorhabditis remanei (nematode): GCK72_014628
Entry
GCK72_014628      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    GCK72_014628
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:crq01009]
    GCK72_014628
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_014628
Protein phosphatases and associated proteins [BR:crq01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     GCK72_014628
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     GCK72_014628
    Little elongation complex (LEC)
     GCK72_014628
SSDB
Motif
Pfam: ELL Occludin_ELL Pullul_strch_C Toxin_trans
Other DBs
NCBI-GeneID: 9829040
NCBI-ProteinID: XP_003108337
UniProt: E3M5Z1
LinkDB
Position
IV:complement(16577146..16579375)
AA seq 630 aa
MLKSSTSMHFSSNSYGHSPRDLLTGATVSNGAGAATTSPPTPVNLDVQRIDCTEGTTVVM
VKLTDEMFAALEEGQRSGKKLRIHVDEREGRVEIGDGTASSKTNNTFLFHKQTLPDQTDT
LIQSGGGVRNVGTYRTKYQVQATDKSFEETKKRAEARAEVEKSRGTKEMKKGGMTSNSRH
FNSSSSTPRNMGSSLNAGSNSSRVSPSFISSKASTSHLPSSKGTPNGSDCKKIDMKPELM
KKSIKKRIIHLVVTQKYSNWEEVYKKLKADGLAPEKDEIEKIRSCVEEVSETRPEMTILS
LRSSFLSEVDQRWMFFNQDEKAHVRRLCQSSSRVVQTENNFAPMRKKGMERMTASSKTSS
EKDKVKEKVEEKIPSPPKELKRVEPEEDDYYPAPEPANKRRAHNLAPASIPPQTMSSQTE
GPIPLKRTKRNESASPPEDPPQKAPEQPKLNPVKLASTIAMQPVPKFEQPRDYHTVASVA
ANGGGSTASSRISSPASSLSSPSQPSCNWEKTFGDIKSLTEAESYFHMFHKEYPMYMECH
KKLTEVSSEFRKLEMKLVTAVNQRKNSPTEQHNQEVKNVERLIQNRYAFYEKDPEFMRAR
QRHTDLRSKLNVLKTRIGSWESIRRQSTTA
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgcttaaatcgtcaaccagcatgcacttctcctcaaatagctacggtcattctcctcgt
gatttgctcactggagcgactgtttcaaacggcgctggcgccgctacaacgtcccctcca
acacctgtcaatctggatgtgcaaagaatcgattgtaccgaaggaacgacggtggtcatg
gtcaaactaacggatgagatgttcgcagctctcgaggagggacaacggagcggtaagaag
ctgcggatacacgttgatgaaagggagggccgcgtcgaaattggtgatggaaccgcttct
tcgaaaaccaacaatacttttctttttcataaacaaacattgccggaccaaacggatact
cttatacaatcgggtggaggtgttcgaaatgtaggaacatataggacaaaatatcaagtt
caagcgacagacaaatctttcgaagaaacgaaaaaacgagctgaagcacgtgctgaggtg
gaaaaaagcagaggaacgaaagagatgaaaaaaggaggaatgacttccaattctcgtcat
ttcaattcctcatcttcaacaccacgaaatatgggttcttctttgaatgccggttccaac
tcatcacgtgttagcccttcatttatttcatcgaaagcttcaaccagtcatcttccgagc
tcgaaaggaacaccgaacggatctgattgcaagaagattgatatgaaaccagaactgatg
aaaaagtcgattaaaaaacgtattatccatcttgtagtgactcaaaaatattccaactgg
gaagaagtatacaaaaaattgaaagctgatggattagctccagaaaaagatgaaattgaa
aaaattcgaagttgtgtagaagaagtttcggagacacgaccggaaatgaccatattgtca
cttcgttcatcttttctgtcggaagttgatcaacgttggatgtttttcaatcaagatgag
aaagctcatgtgagacgactttgtcaatcaagttctcgtgttgttcaaactgagaataac
tttgctccaatgcgtaagaaagggatggaacgaatgaccgctagttcaaagacatcttct
gaaaaggataaagtgaaagagaaagtcgaagaaaagattcccagcccaccgaaagaattg
aagcgtgttgaaccagaggaagatgattattatccagcacccgaaccagctaacaaacgg
cgggctcataacttggctccagcatcaattccaccacaaacgatgtcttctcagactgaa
gggccgatacctttgaaacgaacgaaacggaacgaatcggcaagtcctccagaggatcca
ccacagaaagctccagaacagccaaagttgaacccagttaaactggcttccacgattgct
atgcaaccagtgccaaagtttgaacaaccacgtgactatcacacagttgcatcggttgct
gctaacggtggaggatcgacggcttcgagcaggatctcgtcgcccgcgtcttcgttgtca
tcgccaagtcagccttcatgtaactgggaaaaaacgttcggtgacatcaagtcgctcact
gaagctgagtcatacttccatatgttccataaagaatatcctatgtacatggagtgtcac
aaaaaattgactgaggtttcttccgagtttcgtaaactggaaatgaagcttgtgaccgct
gtaaatcaacgaaagaattctccaaccgaacaacataatcaagaagtaaagaatgttgaa
cgattaatacagaatcgatatgcattctatgaaaaagatcccgagtttatgagagctcgt
caacgtcatacagatctccgctcaaaacttaatgttctgaaaactcgtatcggtagctgg
gaatctatccgaaggcaatcaaccactgcttga

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