KEGG   Caenorhabditis remanei (nematode): GCK72_025252
Entry
GCK72_025252      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03082  ATP-dependent chromatin remodeling
crq03083  Polycomb repressive complex
crq04213  Longevity regulating pathway - multiple species
crq04330  Notch signaling pathway
crq04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GCK72_025252
   03083 Polycomb repressive complex
    GCK72_025252
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    GCK72_025252
   04350 TGF-beta signaling pathway
    GCK72_025252
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    GCK72_025252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_025252
Enzymes [BR:crq01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     GCK72_025252
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     GCK72_025252
   HDAC complexes
    Sin3A-HDAC complex
     GCK72_025252
    BRAF-HDAC complex
     GCK72_025252
    REST complex
     GCK72_025252
    SHIP complex
     GCK72_025252
    MiDAC complex
     GCK72_025252
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     GCK72_025252
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GCK72_025252
  Chromatin remodeling factors
   NuRD complex
    GCK72_025252
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 9826621
NCBI-ProteinID: XP_003100230
UniProt: E3MUH8
LinkDB
Position
X:16232323..16234795
AA seq 459 aa
MESSSSGGAVAEHSRRRIAYYYDANIGNYYYGVEHVMKPNRIRMAHHLILNYGMYRHLGI
FRPFPATVEEMSRFHNPGYLEFLKKATPDNLNRLGGGMLKYNVGEDCPVFDGLFEFCQLS
SGGSLAAAIKLNKKRADIAINWMGGLHHAKKGEASGFCYTNDIVLGILELLKYHKRVLYV
DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGDIKTTGHGIGKNFSVNVPLKSDIN
DQSYQSIFKPVMQRVIERFEPAAIVLQCGADSLNGDPLGRFNMTLKGHGECVRFLRSFNI
PMMLLGGGGYSPNNVARCWAYETAIACNVELSNDIPSNDFMEFFGPNYKLHIEARKVENK
NSQSYLNKMKQEIFENLNDLTFVPSVQMRPIPEDAFQSFNDPTLTVDMANPDIRHAPQIM
DNVVAHPGEFYDAQNTAGMFRHEENYALKFPYPDHQYGF
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggagtccagctctagtggtggagcggtggctgagcactctagacgtcgtatcgcgtat
tactatgacgcgaatatcggaaactactactatggtgtagaacacgtcatgaaacccaac
cgtatccgtatggctcatcacttgattcttaactacggaatgtacagacatctcggaatc
tttagaccattcccagcaactgttgaggaaatgagccgattccacaatcctgggtacctc
gagttcctcaaaaaagctactccggataatttgaatcgcttgggcgggggaatgttaaaa
tacaacgttggtgaggactgtccagttttcgatggactcttcgagttctgccaactcagc
agtggcggatctctggctgctgccatcaaattgaacaaaaaacgagccgacattgcaatt
aactggatgggaggtcttcaccatgctaagaaaggcgaagcatctggattctgctacacc
aatgacatcgtccttggaattttggagctgttgaaataccacaagcgtgttctctacgtt
gatatcgatgttcatcatggtgatggtgtggaagaagcattctacactaccgatcgtgtg
atgacagtctcattccacaagtttggagatttctttccgggaactggtgacatcaagacc
actggtcatggaatcggcaagaatttctcggtgaacgtgccactaaagagcgacatcaat
gatcagagttatcaaagcatttttaagccggtcatgcaaagagttatagaacgttttgag
ccggcagccattgttctccaatgtggagccgactctttaaacggagacccgctgggacgg
ttcaatatgacactcaagggtcatggggagtgtgttcgtttcctccgttcgttcaatatt
cccatgatgttacttggtggaggtggatactcaccaaacaatgttgctcgatgctgggct
tatgaaacagcgattgcgtgtaatgtggaactttccaatgatattccatccaacgatttc
atggagttctttggaccaaactacaaacttcacattgaagctcgcaaagtagaaaataag
aactcacagagttatttgaacaagatgaaacaagaaatcttcgagaatttgaacgacctc
acttttgtcccaagtgtacaaatgcgaccaatccctgaagacgcgttccaatctttcaac
gacccaacgttaaccgtagacatggccaacccggatattcgtcacgctccccagattatg
gacaacgttgtagctcatccaggagaattttacgacgcccagaacactgctggaatgttc
agacatgaggaaaactatgcgctcaaattcccctaccctgatcatcagtacggattctaa

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