Caenorhabditis remanei (nematode): GCK72_025252
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Entry
GCK72_025252 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03082
ATP-dependent chromatin remodeling
crq03083
Polycomb repressive complex
crq04213
Longevity regulating pathway - multiple species
crq04330
Notch signaling pathway
crq04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
GCK72_025252
03083 Polycomb repressive complex
GCK72_025252
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
GCK72_025252
04350 TGF-beta signaling pathway
GCK72_025252
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
GCK72_025252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_025252
Enzymes [BR:
crq01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
GCK72_025252
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
GCK72_025252
HDAC complexes
Sin3A-HDAC complex
GCK72_025252
BRAF-HDAC complex
GCK72_025252
REST complex
GCK72_025252
SHIP complex
GCK72_025252
MiDAC complex
GCK72_025252
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
GCK72_025252
Heterochromatin formation proteins
Other heterochromatin formation proteins
GCK72_025252
Chromatin remodeling factors
NuRD complex
GCK72_025252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
9826621
NCBI-ProteinID:
XP_003100230
UniProt:
E3MUH8
LinkDB
All DBs
Position
X:16232323..16234795
Genome browser
AA seq
459 aa
AA seq
DB search
MESSSSGGAVAEHSRRRIAYYYDANIGNYYYGVEHVMKPNRIRMAHHLILNYGMYRHLGI
FRPFPATVEEMSRFHNPGYLEFLKKATPDNLNRLGGGMLKYNVGEDCPVFDGLFEFCQLS
SGGSLAAAIKLNKKRADIAINWMGGLHHAKKGEASGFCYTNDIVLGILELLKYHKRVLYV
DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGDIKTTGHGIGKNFSVNVPLKSDIN
DQSYQSIFKPVMQRVIERFEPAAIVLQCGADSLNGDPLGRFNMTLKGHGECVRFLRSFNI
PMMLLGGGGYSPNNVARCWAYETAIACNVELSNDIPSNDFMEFFGPNYKLHIEARKVENK
NSQSYLNKMKQEIFENLNDLTFVPSVQMRPIPEDAFQSFNDPTLTVDMANPDIRHAPQIM
DNVVAHPGEFYDAQNTAGMFRHEENYALKFPYPDHQYGF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggagtccagctctagtggtggagcggtggctgagcactctagacgtcgtatcgcgtat
tactatgacgcgaatatcggaaactactactatggtgtagaacacgtcatgaaacccaac
cgtatccgtatggctcatcacttgattcttaactacggaatgtacagacatctcggaatc
tttagaccattcccagcaactgttgaggaaatgagccgattccacaatcctgggtacctc
gagttcctcaaaaaagctactccggataatttgaatcgcttgggcgggggaatgttaaaa
tacaacgttggtgaggactgtccagttttcgatggactcttcgagttctgccaactcagc
agtggcggatctctggctgctgccatcaaattgaacaaaaaacgagccgacattgcaatt
aactggatgggaggtcttcaccatgctaagaaaggcgaagcatctggattctgctacacc
aatgacatcgtccttggaattttggagctgttgaaataccacaagcgtgttctctacgtt
gatatcgatgttcatcatggtgatggtgtggaagaagcattctacactaccgatcgtgtg
atgacagtctcattccacaagtttggagatttctttccgggaactggtgacatcaagacc
actggtcatggaatcggcaagaatttctcggtgaacgtgccactaaagagcgacatcaat
gatcagagttatcaaagcatttttaagccggtcatgcaaagagttatagaacgttttgag
ccggcagccattgttctccaatgtggagccgactctttaaacggagacccgctgggacgg
ttcaatatgacactcaagggtcatggggagtgtgttcgtttcctccgttcgttcaatatt
cccatgatgttacttggtggaggtggatactcaccaaacaatgttgctcgatgctgggct
tatgaaacagcgattgcgtgtaatgtggaactttccaatgatattccatccaacgatttc
atggagttctttggaccaaactacaaacttcacattgaagctcgcaaagtagaaaataag
aactcacagagttatttgaacaagatgaaacaagaaatcttcgagaatttgaacgacctc
acttttgtcccaagtgtacaaatgcgaccaatccctgaagacgcgttccaatctttcaac
gacccaacgttaaccgtagacatggccaacccggatattcgtcacgctccccagattatg
gacaacgttgtagctcatccaggagaattttacgacgcccagaacactgctggaatgttc
agacatgaggaaaactatgcgctcaaattcccctaccctgatcatcagtacggattctaa
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