Crassaminicella thermophila: FQB35_01120
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Entry
FQB35_01120 CDS
T06186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crs
Crassaminicella thermophila
Pathway
crs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FQB35_01120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crs03400
]
FQB35_01120 (mfd)
Enzymes [BR:
crs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FQB35_01120 (mfd)
DNA repair and recombination proteins [BR:
crs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FQB35_01120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
ACCA_BT
Motif
Other DBs
NCBI-ProteinID:
QEK13548
UniProt:
A0A5C0SK35
LinkDB
All DBs
Position
246965..250393
Genome browser
AA seq
1142 aa
AA seq
DB search
MVHGLIDSQIPHIVYALNRSYDRQCLIITHNTYRAKKIYEDLKFFTENRSYNYPAKELVF
YNYDAHSHQNFEERLNIIIKIASKEKCIVVASIESLLHKLMPKEEFVKSFDKLSYGQKIE
LEKIISTFVFLGYERVDMVEAKGQFSIRGGIIDFFPVTSENPYRIELFDDEIDSIRSFDI
NSQLSIEKLKEVFLYPAQEILLNDSLKKNAIEKIKADFEKHSKKTKGEAYDRLKEKINHL
IEALEIQNYPQGFENYLNYYYPDNQFLIDYFEENALIFIDEPSRIKERADTAYKELQESF
KGLLEKGQVLPEQAFLMAPYEDFLFELKKKHSFVLSSLPKNNPMFVPEYIVNFTSRMAQS
FHGKMDMFSNEIKNWKLRGYKTILLCGTEERAKRLEESLKERGIETIYFKEVNHIIQPGQ
VFILQGNLTKGFEYYSNKFLVITEDEIFGTAKKKRVSKKRKDARPIKSFMDLKIGDYVVH
ENHGVGKYVGVEQLKVQGAKKDYLKLKYSGEDLLYVPIEQMDMVQKYIGADGAVPKLNKL
GGTEWKKTKAKAKGAIIDMAKDLLKLNAIRQTTKGHAFSPDTPWQKQFEDSFPYQETPDQ
LRCIKEVKMDMEKRVPMDRLLCGDVGYGKTEVAVRGAFKCVMDGKQVAFLVPTTILAQQH
YNTFVQRFSQFPITIEMLSRFRTDKQQSEIINKVRAGVVDIIIGTHRMLSKDVVFKDLGL
LIIDEEQRFGVQHKEALKKLRKNVDVLTLTATPIPRTLHMSLIGLRDMSVIEDPPEERYP
VQTYVLEYNEEIIRDAILRELGRGGQVFFVFNRVKGIQQMAAKIRNLVPEARVAVGHGQM
SERQLENIMLDFMNGEYDVLVCTTIIETGLDISNVNTIVIYDADKMGLSQLYQLRGRVGR
SNRLAYAYLTYQKDKILTEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNLLGSEQHG
HMAAIGYDLYCKLLEDTVREMKGEQIEEITEANIEINVNAFIPEKYIMNESHKLEIYKKI
ASIRDKQDAYDLEEEIEDRFGNIPQPVMNLISIAYIKAMAQKLGIVHISETDTHVKLEFD
KGSRMNPMLISEMIGLYGNRIHINASANPYIRFTYYFYNNRLKEIKDFLEKISGFNKTEF
QI
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggtacatggattaatagattcacagattccacatattgtgtatgctttaaataggtct
tatgatagacaatgtttgattataacgcataatacgtatagagcaaaaaaaatttatgaa
gatttgaaattctttacagaaaatagaagttataattatcctgcaaaagaacttgtattt
tacaattatgatgctcatagtcaccaaaactttgaagaaagattaaatataattattaaa
atagctagtaaggaaaaatgtatagttgtggcttctatagaaagtttactccataaacta
atgccaaaggaagaatttgtaaaaagctttgataagctaagctatggacaaaaaattgaa
ttagaaaaaatcatatctacttttgtttttttaggatatgaaagagtagatatggtagaa
gcaaaaggacaatttagtatcagaggtggaattatagatttttttccagtcacttctgaa
aatccttacagaatagagctttttgatgatgaaatagattctatccgaagttttgatatt
aattcacaattgtctatagaaaagctaaaagaagtgtttttatatccagctcaagaaata
ttattaaatgattctttaaagaaaaatgctattgaaaaaataaaagctgattttgaaaaa
cattcaaaaaaaacaaaaggagaagcatacgatcgattaaaagaaaaaataaatcactta
atagaggcgttagagattcaaaattatccccaaggatttgaaaattatttaaattattac
tatcctgataatcaatttttgatagattattttgaagagaatgctttaattttcatcgat
gaaccatctaggataaaagaaagagcagatactgcatataaagaacttcaagaatctttt
aaaggattgctagaaaaggggcaagtactaccagagcaagctttccttatggctccttat
gaagattttttgtttgaattgaagaaaaaacacagttttgttttaagtagcctgccaaag
aacaatcctatgtttgtccctgagtatattgtgaattttacttctagaatggcacaatct
tttcatgggaaaatggacatgttttcaaatgagataaagaattggaaattaagaggatat
aaaacgattttattatgcgggacagaggaaagagcaaaaagattagaagaaagtttaaaa
gaaagagggattgaaactatttattttaaagaagtgaatcacattattcaaccaggtcaa
gtttttatccttcaagggaatttaacaaaaggatttgaatattatagcaataaattcttg
gttattacagaagatgaaatttttggcacagcaaaaaagaaaagagtttctaagaaaaga
aaagatgctcgtccaatcaaatcatttatggacttaaaaataggggattatgttgttcat
gaaaatcatggagtaggaaaatatgtaggtgtagaacaattaaaagtacaaggagccaaa
aaggattatctaaaattaaagtattctggtgaagatctattatatgttcctattgaacaa
atggatatggttcaaaaatatattggtgctgatggagctgtaccgaaattaaataaatta
ggtggtacagaatggaagaaaacaaaggcaaaagctaaaggcgctattatagatatggca
aaagatttgttaaaattaaatgcaatccgtcaaacaacaaaaggacatgctttttcacca
gatacgccttggcagaagcagtttgaagatagttttccctatcaagaaacgccggatcag
cttagatgtataaaagaagtaaaaatggatatggaaaagcgtgttccaatggatcgccta
ctttgtggggatgttggatatgggaaaacagaagtggcagtaagaggtgcttttaaatgt
gttatggatggaaagcaggtagcatttttagtacctacaacaatacttgcacaacagcat
tataatacatttgtccaaaggtttagtcaatttccaattacaatagaaatgttaagccga
tttagaacagataagcagcaaagtgaaatcatcaataaagtacgtgcaggggttgtggat
attattataggtacacaccgtatgttatcgaaagatgttgtttttaaagacttgggattg
ttaattattgatgaagagcaaagatttggagtgcagcataaagaagcattgaagaagctt
agaaaaaatgtagatgtattaactctaactgctacacctattccaagaactttgcatatg
tcgttaatcgggcttagagatatgagtgttattgaagatcctcctgaggaaagatatcca
gtacaaacttatgtcttagagtacaatgaggagattataagagatgcaattttaagagaa
ttaggaagaggaggacaggttttctttgtatttaatcgagtaaaaggaattcagcaaatg
gctgctaaaataagaaatttagttccagaggcaagggttgctgttggacatggacagatg
agtgaaagacaattagaaaatattatgcttgattttatgaatggagaatatgatgtttta
gtttgtactacaattattgagacaggcttagatatatctaatgtaaatactatagttatt
tatgatgcagataaaatgggtctctcacaattataccagttaagaggcagggttggaaga
tctaatagattagcttatgcttatcttacttatcaaaaagataagatactgacggaagtt
gcagaaaaaagattaaaagcaattaaagaatttactgagtttgggtcaggatttaagata
gctatgagagatcttgagataagaggagcaggaaatctgttaggaagtgaacaacatggg
catatggcggctattggatatgacctatattgtaaactattagaagatacagtgagagaa
atgaagggagaacaaatagaggaaataacagaggcaaatatagaaattaatgtaaatgca
tttatacctgaaaaatatattatgaatgaaagtcataagctagagatttataaaaaaatt
gcttctattcgagataaacaggatgcttatgatttagaagaagaaatagaagatagattt
ggaaatataccacagcctgtgatgaacttaatttctattgcatacattaaagcaatggca
caaaaacttggtattgtgcacatatcagaaacagatacccatgtaaaattggaatttgat
aaaggaagtcgaatgaatcctatgctcattagtgaaatgataggactttatggaaataga
atccatataaatgctagtgcaaatccctatataagatttacgtattatttttataataat
agattaaaagagataaaagatttcctagaaaaaattagtggttttaataagactgaattt
cagatataa
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