Clostridium felsineum DSM 7320: CROST_041010
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Entry
CROST_041010 CDS
T08192
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crw
Clostridium felsineum DSM 7320
Pathway
crw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CROST_041010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crw03400
]
CROST_041010 (mfd)
Enzymes [BR:
crw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CROST_041010 (mfd)
DNA repair and recombination proteins [BR:
crw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CROST_041010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Castor_Poll_mid
Glyco_tran_WecG
RecG_dom3_C
Virul_Fac
Motif
Other DBs
NCBI-ProteinID:
URZ13336
UniProt:
A0A1S8LQZ2
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All DBs
Position
complement(4415543..4419058)
Genome browser
AA seq
1171 aa
AA seq
DB search
MRLDGLMHPLKSSNKFQDAIYKVRNDKFPIELSGISESGKSYLISGLYEELDNPFLVITD
SDSEAKKIYEDLLFYTQNVYYIPTKEVVFYNIYAISGDLRWERLKVIRKMMSRGKKIIVT
SVENLAAVYLPVDLYKEYTFKLSLGDMIDSKEITRKLVQCGYEHVESVDAKGQFSVKGGI
IDLYSPISDVPYRVELFGDEIESIRSFNTESQRSIEKVNKIEIFPAKEIILTDEALSKGY
EAIKSELESSLSRLKGSNEESYTKLKATMEYNLEALKERSGFETIDTFIPYFYDNTSSFF
DYLKNAFIFVDNYERCKGKIESVYYEFEQNYENFLERGDILPKQGNIIVPKDNIYETLKN
EKRINLESIGKSSNNNSSEGIVFEEITLLSYQGQMDLLINDIKALKEEKYRTVILCGTKS
KGQRLVETLRDRGIESVYKDSILNVDYGEIVISPGSQLRGFKYPEFRLCVISDKEIFGTA
KKKKEKRKNKKGVGKIKSFTELKPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELTYAV
DDKLYVPVEQLDLVQKYIGSEGKTPKVNKLGSSEWVKAKNKVRKSINEIAEELVKLYAVR
TTVNGFKYSKDTVWQKQFEEEFPYNETQDQLIAIEDIKSDMESGKVMDRLICGDVGYGKT
EVAIRAAFKTVMDGKQVAFLVPTTILAEQHYNNFQKRFKDFPVKVDMISRFRSQAEQKVT
LKALKEGNVDIIIGTHRILNKEINFKDLGLLIIDEEQRFGVSHKEKLKQFKKNVDVLTLS
ATPIPRTLHMSLTGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAIMRELGRGGQVFFV
YNKVESIKEMASNLSKLIPEAKVAIAHGQMSERELEKVMIDFMEEKYDILLCTTIIETGI
DIQNVNTLIIYNADKMGLSQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKE
FTQLGSGFKIAMRDLEIRGAGNIMGSAQHGHMATIGYDLYCRMLEETIKEIKGEMQNEPV
ETTIDLKVDAYIPSSYIDDETLKISIYKKIAAIDSYDEMIDVKEELEDRFSSIPQSVENL
MKIAYLRSVGRELGILEIKDKINQLELKFEGNNRINKNMVSGLLKDYGKFILFKMGENPI
ILYNLKSVKRESILEKLEEFLKYMKSLVETN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgatgggcttatgcatcctctgaaaagtagtaataaatttcaagatgctatt
tataaagtaagaaatgacaaatttcctatagaattgtcgggaatttctgaatctggaaaa
agttatttaataagcgggttgtatgaagagttagacaacccttttttagtgattacagat
agcgattcagaggctaaaaaaatatatgaagatttattgttttatacgcaaaatgtatat
tatattcctacaaaggaagtagtgttttataatatatatgctatatctggagacttaagg
tgggaaagattaaaggttataagaaaaatgatgtctagaggtaaaaaaataatagtaact
tctgttgaaaatttagcagcagtttatttacctgtagatttatataaagagtatactttt
aaactttcgttaggagatatgattgattctaaagaaattacaagaaagctagttcaatgt
ggatatgaacatgttgaaagtgtagatgctaaagggcaattttctgtaaagggagggata
atagatttatattcgcctatatcagatgtgccttatagagttgagctttttggagatgaa
atagaatctataagaagtttcaatactgaatctcaaagaagtatagaaaaggtaaataag
atagaaatatttccagcaaaggagataatacttacagatgaagctttaagtaagggatat
gaagctattaaaagtgagcttgaaagttctttaagtaggctcaaaggaagtaatgaggaa
agctatactaagcttaaagctactatggaatataatcttgaggctttaaaagaaagatca
ggctttgaaactatagatacttttattccttacttctatgataatacatctagttttttt
gattacctaaaaaatgcatttatatttgtagataattatgaacgctgcaaaggtaaaata
gaaagtgtatattatgaatttgagcaaaattatgaaaatttcctagaaagaggagatatt
cttcctaagcaaggaaatataattgttcctaaagataatatatatgaaactttaaaaaat
gaaaaaagaataaatttagagtctataggaaaaagttctaataataattcgagtgaagga
atcgtatttgaggaaattactcttttaagttatcaaggacaaatggatttattaattaat
gatataaaagctttaaaagaggagaagtatagaactgtaatattatgtggaacaaaatca
aaaggtcaaagacttgtagaaacacttagggatagaggaattgaaagtgtatacaaagat
agtattcttaatgtagattatggagaaatcgttatatctccaggaagtcaacttagagga
tttaaatatcctgagtttagattatgtgttatttctgacaaggaaatattcggaactgct
aaaaagaaaaaagagaaaagaaaaaataaaaaaggtgtaggaaaaattaagagttttaca
gaacttaaaccgggcgattacattgtacatgttaatcatggtataggtgtatttaaagga
ataaaacaacttgaggttcaaggacataaaaaggattatttagaattgacatatgcagtt
gatgataaattatatgttcctgtagagcaacttgatttggttcagaaatatataggaagt
gaaggcaaaacacctaaggtaaataagcttggaagcagtgaatgggttaaggctaaaaat
aaggttagaaagtcaataaatgaaatagctgaggagcttgttaaattatatgcagtaagg
acaactgttaacggttttaagtattctaaggatacagtatggcagaaacaatttgaagag
gaatttccttataatgaaacacaagatcaacttattgctatagaagatataaagagtgat
atggaaagcggaaaagtaatggatagacttatatgcggtgatgttggttatggtaaaaca
gaagttgctataagagccgcatttaaaacagtaatggatggaaaacaggtagcttttctt
gtaccaacaactatccttgcagagcagcattataataactttcaaaaacgttttaaagac
tttcctgtaaaggtagatatgataagtagatttagaagtcaagcagagcaaaaggtaacg
cttaaagctctaaaagaaggaaatgtagatataataataggtactcatagaattttaaat
aaggagattaactttaaagatttgggacttcttataattgatgaggaacaaagatttggt
gtttcacataaagaaaagcttaaacaatttaagaagaatgtagatgttttaacattgtca
gcaacaccgataccaagaactctccacatgtcgcttacaggagttagagatataagtgta
attgaaactccgccagaagagagatatcctgtacaaacttatgttgttgaatataatgat
cagctgataagagatgcaataatgagggaacttggaagaggtggtcaagtattcttcgta
tataacaaagtagaatctataaaagaaatggcatctaatttaagtaagcttattccagag
gctaaggttgcaatagcgcatggtcaaatgtctgagagagaactggaaaaagttatgatt
gattttatggaagaaaaatacgatatattattatgtacaacaataatagaaacaggaatt
gatattcaaaatgtaaatactcttataatatataatgctgataagatgggtctttctcag
ttatatcaacttaggggtagagtaggaagaactaatagaatggcttatgcttattttact
tataagaaagataaaattttaacagaggttgctgaaaagagacttaaagcaatcaaggaa
ttcactcaattaggttctggttttaaaatcgcaatgagagatcttgaaataaggggtgca
ggaaatataatgggatctgctcagcatggacatatggccacaataggttatgatttatat
tgtagaatgctagaagaaactataaaagagataaagggtgaaatgcaaaatgaacctgta
gaaaccacaatagatttaaaagttgatgcatatataccaagttcatatattgatgatgaa
actttaaaaatatcaatttataaaaaaatagcagcaattgattcatacgatgagatgata
gatgtaaaagaggaacttgaagatagattctcatcaattcctcaatctgtagaaaatctt
atgaaaatagcttatttaagaagtgttggaagggaacttggaattttagagataaaggat
aaaataaatcaacttgaacttaaatttgagggtaacaatagaattaataaaaatatggtg
agtggattgcttaaagattatggtaaatttatactgtttaaaatgggagagaaccccatt
attttatataatttaaagagtgtaaaaagagaatcaatattagaaaaattagaagaattt
ttaaaatatatgaaatctctagttgaaacaaattaa
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