Cryobacterium sp. LW097: B7495_07570
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Entry
B7495_07570 CDS
T04908
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cry
Cryobacterium sp. LW097
Pathway
cry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B7495_07570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cry03400
]
B7495_07570
Enzymes [BR:
cry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B7495_07570
DNA repair and recombination proteins [BR:
cry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B7495_07570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASD21969
LinkDB
All DBs
Position
complement(1640539..1643040)
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AA seq
833 aa
AA seq
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MATGAGAAGNGAVSADGAQREVVTVGGRRVTLTHLDKVMYPETGTTKADILGYYAAVADA
LIRHSRDRPATRKRWVHGVGTPQEPGQVFFQKNLAEGTPDWVERRELAHKARTTVYPLVN
DLATLTWLAQIGTLEIHVPQWRFDVAGAPARPDRLVLDLDPGEGVGLAECAEVARWARAL
LLDMGLDTLPVTSGSKGIHLYAALDGSHTSEQVGQVAHELARALEADHPGEVLSAMTRSL
RDGKVFVDWSQNSANKTTIAPYSLRGLLRPLVAAPRTWRELESPGLEQLDYRQVLKRLER
RPDLLGPVADAIDAGAGSASRTDEDRLHQYRSKRDARRTPEPVPTATPPTPSGGGGASFV
IQEHHARALHFDLRLEQGGVLVSWALPKGVPADPTHNHLAVHTEDHPLEYLEFQGDIPAG
EYGAGTMSIWDSGTYSLQKWRDDEVIVTLHGKPDGGLGGAEHEFALIRTGGAGSRNWLIH
LMKPKRSIPAGWGPAEARYSPMLARLGSLRELSAESDWAYEMKWDGIRMLAYLDGGGKVR
FLTRNGNDVTASFPELVDDLRTAVGTGGAVLDGEVVALDTTNRPDFSLLQTRLGLTDEGD
VRRAQRRAPVHYFVFDLLENDGAALVDQPYAERRAALEAGVTATGTVQVPPSFSGDAATV
LATSRQLGLEGLIAKETGSTYTSGRRTDRWVKIKHVRAQEVVIGGWRPGNGHRGDTFGSL
LVGVPTAGDTARLRYAGRIGTGFRDRDLTSLRRRLDELPTSDTPFDDVPSEEASDAVWVR
PVLVGEVDFAGWTPAGRLRHPSWRGLRPDKAPSDVVLDEAMSADAVPEGTAPR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcaactggcgcgggggctgcggggaatggcgctgtgagcgccgacggcgctcagcgg
gaggtcgtgacggtgggcggccgacgggtcaccctcacccatctggacaaggtgatgtac
ccggagaccggcaccaccaaggccgacatcctgggctactacgcggcggtcgcggatgcg
ctcatccgccattcgcgggaccggccggcgacccgcaagcgctgggtgcacggcgtgggc
acgccccaggagcccgggcaggtgttcttccagaagaacctggccgagggcacgccggac
tgggtggagcgccgggaactcgctcacaaggcgcgcaccaccgtgtacccgctggtgaac
gacctggccaccctcacctggctcgcccagatcggcaccctggagatccacgtgccgcag
tggcggttcgacgtggcgggcgccccggcccgccccgaccggctggtgctggacctggac
cccggcgagggcgtcggcctcgccgagtgcgcggaggtggcccggtgggccagggccctg
ctgctggacatgggcctggacaccctgccggtgaccagcgggagcaagggcatccacctg
tatgcggcgctggacggcagccacacctcggagcaggtgggccaggtggcgcatgaactc
gcgcgggcgttggaagcggaccatccaggagaggtgctcagcgcgatgacccggtcgctg
cgggacgggaaggtcttcgtggactggagccagaacagcgcgaacaagaccaccatcgcg
ccgtacagcctgcgcggactgctgcggccgctggtggcggcaccgcgaacctggcgggag
ctggagtcgcccggactggagcagctggattaccggcaggtgctgaaacgactggaacga
cgccccgacctgctgggcccagtagcggacgccatcgacgcgggcgccggctcggcctca
cggaccgacgaggaccgcctgcaccagtaccgcagcaagcgcgacgcccggcgcacccct
gagcccgtgccgacggcgacaccgccgacgccctccggtggtggcggggcatcgtttgtg
atccaggagcaccacgccagggccctgcacttcgacctgcgcctggaacagggcggcgtg
ctggtctcgtgggcgctgcccaagggcgtgccggccgaccccacccacaaccacctggcc
gtgcacaccgaggatcacccgctggagtatctcgagttccagggtgatattccggcggga
gagtacggcgccggcaccatgtcgatctgggattccggcacctattcgctgcagaaatgg
cgggacgatgaggtaatcgtcaccctgcacggcaaaccggacggcggtctgggcggtgcc
gaacacgagttcgcgctcatccggaccggcggtgcggggtcgcgcaactggctgatccac
ctgatgaaaccgaaacgatcgatcccggccggctggggtcctgccgaggcccgatactcc
cccatgctcgccaggctgggcagcctgcgcgagctgtctgcggagtccgactgggcctac
gagatgaagtgggatggcatccggatgctggcctacctcgacggcggcgggaaggtgcgc
ttcctcacccggaacggcaacgacgtcacggcatccttccccgagcttgtggacgacctg
cgaacggccgtgggaaccggcggcgccgtgctcgacggggaggtcgtggcccttgacacc
acaaaccggcccgacttctcactgctgcagaccaggctcgggctcaccgatgagggtgat
gtgcgccgggcgcagcggcgggcccccgtgcactatttcgtcttcgacctgctcgagaac
gacggcgctgctctggtcgaccagccgtacgcggagcgccgggcggctttggaggccggt
gtgacggccaccggaaccgtgcaggtgccgccgtccttctccggcgacgccgccacggtg
ctggccaccagccggcaactcggcctggagggactgatcgccaaggagaccggcagtacc
tacacgagcggacgccgcaccgaccggtgggtgaagatcaaacacgtcagggcacaggag
gtcgtgatcggcggctggcggcccggaaacgggcaccgcggcgacaccttcggctcgctt
ctcgtgggcgtgccgacggccggcgacacagcccgactgcggtacgccgggcggatcggc
accggcttccgcgaccgcgacctgacgagcctgcgccgccggctcgacgagctgcccacg
tcggacaccccgttcgacgacgttccgtcggaggaggcgtccgacgccgtgtgggtgcgc
ccggtgctcgtgggcgaagtggacttcgccgggtggacaccggccggccggctgcggcac
ccgagctggcggggcctgcgcccagacaaagcgcccagcgatgtggtgctcgacgaggcg
atgtcggcggacgcggtgccggaggggacggcgccccgatga
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