Chlorocebus sabaeus (green monkey): 103234195 Help Entry 103234195         CDS       T04361                                  Symbol UPF1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism csab  Chlorocebus sabaeus (green monkey) Pathway csab03013   Nucleocytoplasmic transport csab03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:csab00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     103234195 (UPF1)    03015 mRNA surveillance pathway     103234195 (UPF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:csab03019]     103234195 (UPF1) Enzymes [BR:csab01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      103234195 (UPF1)     5.6.2.5  RNA 5'-3' helicase      103234195 (UPF1) Messenger RNA biogenesis [BR:csab03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      103234195 (UPF1)    mRNA cycle factors     Common to processing body (P body) and stress granule      103234195 (UPF1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  103234195 NCBI-ProteinID:  XP_007994027 Ensembl:  ENSCSAG00000005276 LinkDB All DBs Position 6:17291189..17328768 Genome browser AA seq 1137 aa AA seqDB search MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG GPGSAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNANLTQHTDYGDEIAIELRSSVGA PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPK RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAI IPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQA NGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISM SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY NT seq 3414 nt NT seq  +upstreamnt  +downstreamnt atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag gccgagctgctcggcgccgatacacagggctccgagttcgagttcaccgactttactctt cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga ggcccaggcagcgcgggcgcgggcgccgcggcgggacagctcgacgcgcaggttgggccc gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc aagaagtggttctgcaatggacgtggaaatacttctggcagccatattgtaaatcacctt gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc ctggagtgctacaactgcggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa gctgactcggtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgctttctgtcc tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag cagatcaacaagctggaggagctatggaaggaaaacccttctgccacactggaagacctg gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac cagtaccagaacatattcgggcccctggtcaagctggaggccgactacgacaagaagctg aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataatgcaaactta actcagcacacagattatggcgatgagattgccattgagctgcggagcagcgtgggtgca cccgtggaggtgactcacaacttccaggtggattttgtgtggaagtcgacctcctttgac aggatgcagagtgctttgaaaacgtttgccgtggacgagacctcagtgtccggctacatc taccataagctgctgggccacgaggtggaggacgtaatcatcaagtgccagctgcccaag cgcttcacggcgcagggcctccccgacctcaaccactcccaggtttatgccgtgaagact gtgctgcaaagaccgctgagcctgatccagggcccgccaggcacggggaagacagtgacg tcggccaccatcgtctaccacctggcccggcaaggcaacgggccggtgctggtgtgtgct ccgagcaacatcgccgtggaccagctaacagagaagatccaccagacagggctgaaggtc gtgcgcctctgtgccaagagccgcgaggccatcgactccccagtgtctttcctcgccctg cacaaccagatcagaaacatggacagcatgcctgagctgcagaagctgcagcagctgaaa gatgagactggggagctgtcgtctgctgacgagaagcggtaccgggccttgaagcgtacc gcggagagagagctgctgatgaatgcagatgtcatctgctgcacatgtgtgggcgccggc gacccgagactggccaagatgcagttccgctccattttaatcgacgaaagcacccaggcc actgagccagagtgcatggttcccgtggtccttggggccaagcagctgatccttgtaggt gaccactgccaactgggcccggtggtgatgtgcaagaaggcggccaaagccgggctgtcg cagtcgctcttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtccag taccggatgcaccctgcactcagcgccttcccgtccaacatcttctacgagggctccctc cagaatggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccccag cccgataaaccgatgttcttctacgtgacccagggccaagaggagatagccagctcgggc acctcctacctaaacaggaccgaggctgcgaacgtggagaagatcaccacgaagttgctg aaggcgggcgccaagccggaccagattggcatcatcacgccctacgagggccagcgctcc tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaagtg gagatcgccagtgtggacgcctttcagggacgcgagaaggacttcatcatcctgtcctgt gtgcgggccaacgagcaccaaggcattgggtttttaaatgaccccaggcgtctgaacgtg gccctgaccagagcaaggtacggcgtcatcatcgtgggcaacccgaaggcgctgtcgaag cagccactctggaaccacctgctgaactactacaaagagcagaaggtgctggtggagggg ccactcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaac accatcaacccgggagcccgcttcatgaccacagccatgtatgatgcccgggaggccatc atcccaggctccgtctatgatcggagcagccagggccggccctccagcatgtacttccag acccatgaccagattggcatgatcagtgccggccccagccacgtggctgccatgaacatt cccatccccttcaacctggtcatgccgcccatgccaccgcctggctattttggacaagcc aacgggcccgctgcaggccgaggcaccccgaaaggcaagactggccgtgggggacgccag aagaaccgctttgggcttcctgggcccagccagaccaacctccccaacagccaagccagc caggatgtggcgtcacagcccttctctcagggcgccctgacgcagggctacatctccatg agccagccctcccagatgagccagcccggcctctcccagccggaactgtcccaggacagt taccttggtgacgagtttaaatcacaaatcgacgtggcgctctcgcaggactccacgtac caaggagagagggcgtaccagcatggcggggtgacggggctgtcccagtactaa

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