Chitinophaga sancti: SIO70_27960
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Entry
SIO70_27960 CDS
T09582
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
csac
Chitinophaga sancti
Pathway
csac02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
csac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SIO70_27960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csac03021
]
SIO70_27960
Transcription machinery [BR:
csac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SIO70_27960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
GerE
HTH_40
HTH_23
TetR_N
HTH_38
HTH_DeoR
DUF6362
Motif
Other DBs
NCBI-ProteinID:
WPQ62198
LinkDB
All DBs
Position
complement(6960470..6961054)
Genome browser
AA seq
194 aa
AA seq
DB search
MTDQFTTWIRESADGNQLAYGYLYTHHYPRLQVAITFITQDKVETEEILQETFLRIWKTK
EKLLLVRSFEDYAFRVAKNLLFDHLRRKKVHLKAIDTIFRHQDDATTGGDHQLVYKEYHE
IATRAIDTLDPQKKEIFLLRTQEGLSFEEIADKCGIAVVTVKKHFYAAFHTLKKLLNEHG
GVFTFLLIVWSRGH
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
ttgacggatcaattcacaacatggataagagaatcggcggacggcaatcagctggcatat
ggttatttatatacccatcattacccccgtctgcaggttgccattacctttattacccag
gataaggtcgaaaccgaagagatcctgcaggagactttcctccgtatctggaaaacaaaa
gagaagttattactggtccggtcatttgaagactacgccttccgggtagccaaaaacctc
ctgtttgaccacctccggcgcaaaaaggtgcacctgaaagccatcgacaccatcttccgg
catcaggacgatgctactaccggtggcgaccatcagctggtatataaagaataccatgaa
attgccacccgagccatcgataccctcgatcctcagaaaaaggagattttcctgctacgc
acacaggaaggactcagttttgaagaaattgccgacaaatgcgggatcgctgtagtcacc
gtcaaaaaacatttttacgcagcctttcataccctcaaaaagcttctgaatgagcatggt
ggcgtatttaccttcctcctcatcgtctggtccagggggcattag
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