Cololabis saira (Pacific saury): 133452930
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Entry
133452930 CDS
T09849
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133452930
03015 mRNA surveillance pathway
133452930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133452930
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133452930
5.6.2.5 RNA 5'-3' helicase
133452930
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133452930
mRNA cycle factors
Common to processing body (P body) and stress granule
133452930
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
AAA_22
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
133452930
NCBI-ProteinID:
XP_061588678
LinkDB
All DBs
Position
10:34086529..34120411
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQALLFLDGEDAELLGADTQGSGYDYTDFTLPSQSQSQNQNQTLNQNLNQL
DSQVNGVLHNGDNPLKSSQLLAELNFEEDEEDICYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIINHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQDQLRARQITA
QQINKLEELWKESPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLALPWKGIGH
VIKVPDNYGDEIAIELRSSAGVPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVVMKCQLPKRFTVQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHSQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRAAERELLMNADVICCTCVG
AGDPRLAKLQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKAFDIQW
PQADKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPGQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPINNLRESLMQFSKPRKL
VNTINPGGRFMSSVMYDAKEVLSSGSVCDRSSNGRTSNMYFHTHDQIGVIGTGPGPMSSM
NIPIPFNLVMPPLSPSGYLGQLNIAGEGMKSKPGGGGTRGSRQRGRGNMGNHGAAGGGGE
QHGGHMSGSQASQDHGSQPFSQGPLTQAYMSQPSQMSQPGLSQPELSQESFLGDEFKSQM
DVALSQDSTYQGERAYQPGGVAGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacggcccgagctcgcaggcgctgctgttcctggacggcgaggac
gccgagctgctgggagcagacacgcagggctccgggtacgactacacggacttcaccctg
ccgagccagagccagagccagaaccagaaccagaccctgaaccagaacctgaaccagctc
gacagccaggtcaacggtgtgctgcacaacggagacaaccccctgaaaagcagccagctg
ctggccgagctgaacttcgaggaggatgaggaggatatctgctacaccaaggacctgccg
ctgcacgcctgcagctactgtgggattcacgatccagcctgtgtggtctactgtaacacc
agcaagaagtggttttgtaatggtcgcggtaacacatctggcagccatatcataaaccac
ctggtgagggccaagtccaaggaggtgaccctacataaagacggccctctgggggaaacc
gtgttggagtgctataactgcggatgtcgcaacgtctttctgctgggcttcatccctgcc
aaggccgactcggtggtggtgttgctgtgcaggcagccgtgtgcgagccagagcagcttg
aaggacatcaactgggacagctcccagtggcaacctctcatccaggaccgctgcttcctg
tcctggctggtgaagatcccctcggagcaggaccagctccgggcacgccagatcaccgcc
cagcagataaacaagttggaggagctctggaaggagagtcccagtgcgactctggaggac
ttggagaagcccggggtggacgaggagcctcagcacgtcctgcttcgctatgaggacgcc
tatcagtaccagaacatctttggaccgctggtgaagctggaggccgactacgataagaaa
ctgaaagagtcgcagactcaagacaacataacagtcagatgggatctcggtctcaataag
aagaggattgcttatttcacccttccaaagacagactctgacatgcggctgatgcaggga
gatgagatctgcctcaggtacaaaggagacctggctcttccctggaagggcattggacat
gtcatcaaagtccctgacaactacggagatgagatagccatagagctgaggagcagcgcg
ggcgttcccgtggagatccctcacaactttcaggttgactttgtctggaagtcgacctcc
tttgacaggatgcagagtgccctgaaaacgtttgccgttgatgaaacgtcggtctctgga
tacatctaccacaaactgctgggacatgaggtggaggatgtggtgatgaagtgccagctg
cccaagcgcttcaccgtccaaggattacctgacctcaaccactctcaggtgtatgctgtg
aagacagtgctgcaacgccccctcagtctgatccagggcccccctggaacaggaaaaact
gttacctccgccaccattgtgtaccacttggctagacaaggcaatgggccagtgctggtt
tgtgctccgagcaacatagctgtggaccagctgactgagaagatccaccagacggggctc
aaggtggtgaggctctgcgccaaaagcagggaggccatagactcgcccgtgtccttcctg
gctctgcacagccagacccgcaacatggacagcatgccagagcttcagaagctgcagcag
ctgaaggacgagactggagagctgtcctcctccgacgagaaacgctacagagctctgaga
cgcgctgctgagagagaacttctcatgaatgctgatgtgatctgctgcacgtgcgtcgga
gcaggagatcctcgcctggccaaactgcagttccgatcaatcctgattgacgagagcacc
caggccaccgagcccgagtgcatggtgcctgttgttctgggagccaaacaactgatcctg
gtgggcgatcactgccagctggggccggtggtgatgtgtaagaaggcggctaaagccggt
ctctcgcagtctctgtttgaacggctcgtggttctggggatccggcccattcgtctgcag
gtccagtaccgcatgcacccggccctcagcgctttcccctccaacatattttacgagggc
tctctgcagaacggagtcactgctgctgaccgggtgaaaaaagccttcgacatccagtgg
ccacaagctgacaagcccatgttcttctacgtcacgcaaggccaggaggagatcgccagc
tctgggacgtcgtacctcaacagaactgaagctgccaatgtggagaagatcacgacgaga
ctgttgaaggctggagccaaaccgggtcagatcggcatcattaccccgtatgagggacag
aggtcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctctaccag
gaggtggaaatagccagtgtggacgctttccaaggcagagagaaagacttcatcatcttg
tcttgcgtgagggcgaacgagcaccaaggcattggtttccttaatgatccccgccgtctc
aacgttgctcttaccagagccaggtatggggtgatcattgtggggaaccccaaagctctg
tccaagcagcctctgtggaaccacctgctaaattactacaaggagcagaaggtgctggtc
gaggggccgatcaacaacctgagagagagtctgatgcagttcagcaagccccgcaagctg
gtcaacaccatcaaccccgggggtcgattcatgagttcagtcatgtatgacgccaaggag
gtgctgagctctggatctgtttgtgaccgcagcagcaacggacgcacgtccaacatgtat
ttccacacccatgaccagatcggtgtgatcggcaccgggcccggtcccatgtcgtccatg
aacatccccatccccttcaacctggtgatgccccctctcagtccctcggggtacctggga
cagttgaacattgcaggtgaagggatgaagagcaagccaggcggtggtggcactcgaggc
agccgtcaaagaggccgtggcaacatggggaaccacggtgcggcgggtggagggggggag
cagcacgggggccacatgagcggcagccaggccagccaggaccacggctcccagcccttc
tcccaggggccgctcacgcaggcctacatgagccagccgtcccagatgagccagcccgga
ctctcccagcctgaactctcacaggagagtttccttggagacgagttcaagtcccagatg
gatgtggctttgtcccaggactccacctaccagggggagcgggcctaccagcctggtggc
gtggccggactatcccagtactag
DBGET
integrated database retrieval system
