Cololabis saira (Pacific saury): 133454903
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Entry
133454903 CDS
T09849
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM32-like
KO
K10607
tripartite motif-containing protein 32 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133454903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133454903
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133454903
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133454903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-RING_2
zf-B_box
zf-C3HC4_2
zf-C3HC4_4
zf-RING_11
Baculo_IE-1
Haem_bd
DUF3117
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-GeneID:
133454903
NCBI-ProteinID:
XP_061589614
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All DBs
Position
11:3609150..3620823
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AA seq
677 aa
AA seq
DB search
MAAAAGPAPPLDPELLREVLECPICLDTFSPETLRPKLLQCGHTVCRPCLEKLLASTING
VRCPFCSKVSRMSSIAQLADNLTVLKILDAAAPGAGALMCGACGGRLPRHYCRDCRSVLC
EPCRAAGGGHEGHAFLPVAAAAERRRRELGGEMAALRDAMGEIQKRKRALEGVSKALRQK
YRAVQREYDAAELRLQEALERSRSAFTAAVGEVERLNATVLEEQTYLLSLAEVKLVSRCD
YLAMQARQSDIALLKDDGGAADEAEEPDPRSGLPSRFTLREPALVTPEPLAAAAAAEVGH
LTTRTYVVDAEDGEGGDSGLEAAAEAGSGEGGAAGDVYRDVDMVEEAVSCGSPASFKSRS
LDAGDAAAAVTAGPPPLCQLVKRMGCKGALPGMFNLPVSVCVAPQGEVLVADRGNYRVQI
FNRKGFQREIRRSASSIDNFVLSFLGADLPNLIPLSVAVTTQGLVGVTDNYDNSVKVYGL
DGHCVACHRHQLVKPWGIAATPAGQFVVSDVEGGKLWRLAVDRGVGVVSYSRLCSAVRPK
FVACDAAGTVYFTQGLALNFEKRQNEPQLEGGFSIGSVGADGRLGRQLSHFFSEAEDFRC
ITGMCVDAGGDLLVTDSGRREVLRFPRDGGFNVLVRDGLSCPVGVCTTAKGQLLVLDCWD
HCVKVYTYVQRRHSNAS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggggccggcgccccccctggacccggagctgctgcgggaggtcctg
gagtgtccgatctgcctggacacgttcagcccggagacgctgcggcccaagctgctgcag
tgcggccacacggtgtgccggccgtgcctggagaagctgctggccagcaccatcaacggc
gtgcgctgccccttctgcagcaaggtgtcgcgcatgagcagcatcgcccagctggccgac
aacctgacggtgctgaagatcctggacgccgcggcgcccggcgccggcgccctgatgtgc
ggcgcctgcggcggccgcctgccgcggcactactgccgggactgcaggagcgtgctctgc
gagccctgccgggcggcgggcggtgggcacgagggccacgccttcttgcccgtggcggcg
gcggccgagcggcggcggcgcgagctgggcggcgagatggccgccctgcgggacgccatg
ggggagatccagaagaggaagcgtgcgctggagggcgtgtccaaggcgctgcggcagaag
taccgggcggtgcagcgggagtacgacgccgccgagctgcgcctgcaggaggcgctggag
cggtcgcggagcgccttcacggccgccgtgggcgaggtggagcggctcaacgccacggtg
ctggaggagcagacgtacctgctcagcctcgccgaggtcaagctggtgtcgcgctgcgac
tacctggccatgcaggcgcggcagagcgacatcgccttgctcaaggacgacggcggtgcc
gccgacgaggcggaggagccggacccgcggagcggcctgccgtcgcggttcacgctgagg
gaaccggcgctggtgacgccggagccgctagccgccgccgctgccgccgaggtcggtcac
ctgaccaccaggacgtacgtcgtcgacgcggaggacggcgaaggcggcgacagcggcctg
gaggcggcggccgaggcggggagcggcgagggcggggcggcgggggacgtctaccgcgac
gtggacatggtggaggaggcggtgtcgtgcggctctccggccagcttcaagtcccggtcc
ctggacgcgggcgacgcggcggcagcggtaacggcggggccgccgccgctctgccagttg
gtgaagaggatgggctgcaagggcgcgctgcccggcatgttcaacctgccggtgagcgtg
tgcgtggcgccgcagggcgaggtgctggtggccgaccgcgggaactaccgcgtgcagatc
ttcaaccgcaagggcttccagcgcgagatccggcgcagcgccagcagcatcgacaacttc
gtgctcagcttcctgggggccgacctgcccaacctcatcccgctgtccgtcgccgtgacg
acgcagggcctggttggcgtcaccgacaactacgacaactcggtgaaggtgtacgggctg
gacggccactgcgtggcgtgccaccgccaccagctggtgaagccgtggggcatcgccgcc
acgccggcgggccagttcgtggtgtcggacgtggagggagggaagctgtggcggctggcg
gtggaccgcggcgtgggcgtggtgagctacagccggctctgctccgccgtgcggcccaag
ttcgtggcgtgcgacgcggcggggacggtgtacttcacgcagggcctggccctgaacttc
gagaagcggcagaacgagccgcagctggagggcggcttctccatcggctcggtgggcgcc
gacggccggctgggccgccagctcagccacttcttctccgaggccgaggacttccgctgc
atcaccggcatgtgcgtggacgccggcggagacctgctggtcacggactcgggccgccgg
gaggtgctgcggttcccccgggacgggggcttcaacgttctggtgcgcgacgggctgagc
tgccccgtgggcgtctgcaccaccgccaagggccagctgctggtgctggactgctgggac
cactgcgtcaaggtgtacacctacgtgcagaggaggcactccaacgcctcgtag
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