Cololabis saira (Pacific saury): 133458560
Help
Entry
133458560 CDS
T09849
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133458560 (upf1)
03015 mRNA surveillance pathway
133458560 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133458560 (upf1)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133458560 (upf1)
5.6.2.5 RNA 5'-3' helicase
133458560 (upf1)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133458560 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
133458560 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
133458560
NCBI-ProteinID:
XP_061594575
LinkDB
All DBs
Position
13:29481699..29506045
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGHSQSQLDGQVNG
PDEVLHNGGVDESVVKTSQLLGELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQQVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSGVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRTLKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMAA
MNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRSGRQRVRGSGHQASQGNGPHS
QVSMDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcctggacacggaggag
acggagctgctcggagcggacacgcagggatccgagtacgactttaccgacttcacgctg
cccagccagacccagacccagggccacagccagagccagctggacggacaggtaaatggt
ccagatgaggtcctgcacaacgggggagtcgacgagtccgtcgtcaaaaccagtcagttg
ttgggcgagctgaactttgaggaggatgaggaagacgcgtactacaccaaagacctacct
gtgcacgcttgcagctactgtggtatccatgacccagcatgtgtggtatactgcaacacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
atggtgagggccaaatgcaaagaagtaacattgcataaagatggacccctgggagagaca
gtgctggagtgttacaactgcggctgccgcaacgtcttccttttgggcttcatcccagcc
aaagctgattctgtggttgtgcttctttgcaggcagccatgtgccagccagagcagcctg
aaggatatcaactgggacagctcacagtggcaacccctgatccaggaccgctgttttctg
tcctggctggtgaagattccatcagagcaggagcaacttcgagctcgtcaaatcactgct
cagcaaatcaataagctggaggaactctggaaggacaatcccaccgctaccttggaggac
ctggagaaacccggtgtggacgaggagcctcagcaagtgctgctgcgctatgaggatgct
taccagtaccaaaacatctttggccctctggtgaaactggaggctgattatgacaagaaa
cttaaggagtcacagacccaagacaatataacagtcaggtgggatctaggactgaacaaa
aagcggattgcctattttacactccccaaaacggattcagatatgaggctgatgcaaggt
gatgaaatctgcttgcgttacaagggagacttggcaccgctgtggaagggcattggccat
gtcatcaaagtcccggacaattatggtgatgaaattgccattgagttgcgaagtggggtt
ggagcacccgtggaaatcccacacaacttccaggtggactttgtatggaaatccacttct
tttgacaggatgcaaagtgccctcaaaacctttgctgttgatgagacctctgtgtctggc
tacatctaccacaaacttctgggccatgaggttgaggatgtcaccatcaagtgccagcta
ccaaagcgcttcactgcccagggtctgcctgacctcaatcactcacaggtgtatgctgtg
aagacagtgctccagaggcctctcagtctaatccagggtcctcctggcactgggaagact
gttacatctgccacaattgtatatcacctttcccggcagggcaatggaccagttctggtc
tgtgcccccagtaacatcgctgtggaccagttgactgagaagatcgacaagactggactg
aaggttgtccggctgtgtgctaaaagccgggaggccatcgagtccccagtatcttttctg
gcactccacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcagcag
ctaaaggatgagactggagagctttcgtctgctgatgaaaaacgctacagaactttgaag
cgcacagctgagagggaactgctgatgaacgctgatgtgatttgctgcacctgtgttggg
gctggggatccccgtctggccaagatgcagttccgctccatcctgattgatgagagcact
caggccactgagccggagtgtatggtccccgtggtgctgggagccaaacagctcatcctt
gtgggtgaccactgccagctgggtcccgtggtgatgtgtaagaaggcagccaaagcaggt
ctgtctcagtccctatttgaacgtttggtggttctgggaatccgaccaatccgcctgcag
gtccagtaccgcatgcatccggctctcagtgccttcccctccaacatcttctatgagggc
tccctacaaaatggtgtcactgcagctgatcgcatcaagaaaggctttgactttcaatgg
cctcagccagataagcccatgttcttctatgtgactcaaggtcaggaggaaattgccagc
tctggaacttcgtaccttaacaggactgaggcagccaacgttgagaaaatcaccaccagg
ttgctgaaagcaggagccaaacctgatcagattggaatcatcaccccgtacgagggtcag
cgctcgtaccttgtccagtacatgcagttcagtggctccttgcacacaaaactctaccag
caagtggaaattgccagtgtggacgccttccagggaagagagaaagacttcatcatcctg
tcttgtgtccgtgcgaacgagcaccagggcatcggcttcctgaatgaccctcgccgtctc
aacgtggcgctgaccagagccaagtacggtgtgataattgttgggaacccaaaggccctc
tccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaagttcttgtt
gaaggacccctgaacaatcttagggagagcctcatgcagttcagtaaaccccgcaaactg
gtcaacaccatcaaccctgggggacgctttatgagcactgccatgtacgatgcacgcgag
gccctcattcctggttctgcctacgaccgcagcaatgctgctggtcgtccatcgaatatg
tattttcaaacccacgaccagattgggatgattggggcaggccctggtcacatggccgct
atgaatatcccaataccgttcaacctagtgatgcccccgatgcctccacccagctacttg
ggccagaccaacggccctgctgcaggtcgtggtgccatgaaaggtaaacctggccgtagc
gggcgacagagggtccgtggctctggacaccaggccagtcaaggtaacggaccccacagc
caggtcagcatggacggggcctcccagtccttctctcaggggccactgactcaaggttac
atctccatgagccagccctctcagatgagccagcccggcctctcccagcccgagttgtct
caggacagctacctgggtgacgagttcaagtcccaaatcgatgtggctttgtcccaggac
tcgacttaccagggtgaacgtgcgtaccagcatggcggggtgaccggactgtcacagtac
taa
DBGET
integrated database retrieval system
