Cololabis saira (Pacific saury): 133459885
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Entry
133459885 CDS
T09849
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04140
Autophagy - animal
csai04148
Efferocytosis
csai05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133459885 (vps11)
04148 Efferocytosis
133459885 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133459885 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133459885 (vps11)
Membrane trafficking [BR:
csai04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133459885 (vps11)
Hops complex
133459885 (vps11)
BRITE hierarchy
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
ADIP
zf-RING-like
GHL13
Kbp-5
Motif
Other DBs
NCBI-GeneID:
133459885
NCBI-ProteinID:
XP_061596224
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All DBs
Position
14:complement(25833283..25847449)
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AA seq
926 aa
AA seq
DB search
MATFLQWRKFVFFDKDTVKDPVDNGQSFVLPKGISASDSGRGHIVLGDMDGKIWLLMRSL
QLTSFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNLDKRDGGNPLCTRIFPAI
PGNKPTEVSCLSIHENLNFMAIGFTDGSVVLTKGDITRDRHSKTVTLHEGSSPVTGLAFR
QMAKVTNLFVATLERVYSYTLSNKEYPKIELDSHGCALHCSSLADPSQDSQFIVASDECV
YLYQPDERGPCFAFDGQKLLAHWHRGYLFLLIRDVKSPNKTGFGSRERFQPDKHLLTVYD
LDNKFIAYSASFDDVIDVVAEWGSFYILTRDGTMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRHYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLDEFIKSSENEVHFDVEIAIKVLRQA
GYHGHAVFLAEKHKHHEWYLKIQLEDLKNYQEGLFYIGCLPFEQAESNMKRYGKTLMHHV
PEGTTLLLKGLCTNYHPSGAAAEVGSLDRGHVSKANSEEFIPIFANNPRELKAFLEHMIE
VDTCSPQGVYDTLLELRLQDWAHEKDIERKRVLQGEAVSLLRSVNTVFDKALVLCQMHNF
KEGILYLYEKGSLYQQIMHYHMQNEEYGKVVEACKRFGDQEGCLWEQALGYFARKEEDCK
AYIGEVLHHIDEKNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRETQQIEDDEHKISQ
YREETAHLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFDSYAETES
ECPTCTPENRKIMDMLRAQDQKRNLHDHFTRQLHGSNDGFSVVADYFGRGVFNKLTLVTD
PPGSKTVGSLEVNLQRDLLIHTKRNS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtttctacagtggcggaaatttgtctttttcgataaagacacagtgaaagat
ccagtggataatggacaaagctttgtccttcccaaaggtatatcggcaagtgactccggc
cggggtcatattgttctcggagatatggatggcaagatctggctcttgatgcgctccctg
cagctgacttcttttcaggcttacaaattgcgcgtgacacacctttaccagctgaaacag
cacagcatccttgtatcagtggggcaggatgagcatggaatcaaccctctagtaaaggtc
tggaaccttgataaaagagatggtggaaatccgctctgcacacggatttttcctgcgatt
cctggcaacaaaccaactgaagtgtcttgtctcagcatacatgaaaacctcaacttcatg
gccattgggtttacagatggcagcgtggtcttgactaagggtgatatcaccagagatcgt
cacagtaaaactgtgactctgcacgaggggagtagtccagtcacgggcctcgccttccgc
caaatggcaaaagttaccaatttatttgttgccactctggagagagtctatagctacacc
ctgtccaacaaggaatatcccaagatagagttggattcacacggttgtgcgttacactgc
tcgtctttggcagatccatcccaggattcccagttcatcgtggccagtgatgaatgtgtg
tacctataccagcctgatgaacgaggaccctgctttgcttttgatgggcaaaagcttttg
gcccactggcatcgtggatatttgttcttgctcatcagggatgtgaagtcacccaacaaa
accgggtttggcagcagggagcgcttccagccagacaaacatcttttaaccgtgtatgat
ctggacaacaagttcatcgcctacagtgcatcttttgatgacgtcatagacgtggtggcg
gagtggggctccttctatattctgaccagagatggaacaatgtttgttctgcaggagaaa
gacacacagaccaagcttgagatgctgtttaagaagaacctgtttgtgatggccataaat
ctggctaagagccagcacctggacagtgacggactttcagagatctttcggcactacggt
gatcacctttacctaaagggagatcacgacggggccatccagcagtacatccgcaccatt
ggaaaactggagccttcatatgtcataagaaaattcctggatgcacaaaggatccacaac
ctcacagcgtatctgcaagcccttcataggcagtcgttggccaatgcagatcacaccacg
ctgcttctgaactgttacaccaagctgaaggacagttccaagctggatgagttcattaag
agcagtgaaaacgaggtccactttgatgtggaaattgccatcaaggttctccgtcaggcc
ggctaccacggccacgccgtgttcttggctgagaagcacaagcaccatgaatggtacctg
aaaatccagctggaagacctcaagaactatcaggaagggctgttttacattgggtgtctg
ccttttgaacaagctgaaagcaacatgaagcgttacggcaaaacgctgatgcaccacgtt
cctgagggcaccacgttgcttcttaagggtttgtgtaccaactaccaccccagtggagct
gctgctgaagtcggcagcctggacaggggacacgtcagcaaggcaaactccgaagaattc
atccctatttttgctaataacccgcgagagctgaaagccttcctggagcacatgattgag
gttgacacctgctctccccagggtgtgtatgacacactgcttgaactccgactgcaagac
tgggcacatgaaaaagacattgagaggaagagagtcctgcagggggaagctgtatcactg
ctgaggagtgtcaacactgtgtttgataaagccctggtcctttgccaaatgcacaacttt
aaagaaggcatcctctacctttacgagaaaggatccttgtaccagcaaattatgcactac
cacatgcagaacgaggagtatggaaaagtagtggaagcctgcaagcgctttggagaccaa
gagggatgcctctgggagcaggcgctcggatactttgctagaaaggaagaagactgcaag
gcttatatcggtgaagtcttacatcatattgatgagaaaaacctgatgcctccgttactt
gtggtgcagacgctggctcataactcaacagccacgctctcagttatcaaggattacctc
atcaataagctgcagagagagacgcagcaaatagaggacgacgaacacaaaatcagccag
tatcgtgaggaaactgctcatctacgctctgagatccaagagctaaagacaagtgccaag
atattccagaagaccaagtgtaacatgtgcaacagtcccttggagcttccatcggttcat
ttcctgtgcagccactcattccaccaacactgctttgacagctatgcagagaccgaatca
gagtgtccaacttgcacaccagagaaccgcaaaatcatggatatgctgcgtgctcaggac
cagaagcgcaacctccacgaccattttacccgacagttacatggctccaacgacggtttc
tcagttgtggctgactattttggccgaggagtgtttaacaaactgacgttggtcactgat
ccgcctggaagtaaaactgtggggagtcttgaggtcaacctgcagagagatcttctcatc
cataccaagagaaatagctag
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