Chryseobacterium salivictor: NBC122_02419
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Entry
NBC122_02419 CDS
T07515
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csal
Chryseobacterium salivictor
Pathway
csal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NBC122_02419 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csal03400
]
NBC122_02419 (ligD_2)
Enzymes [BR:
csal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NBC122_02419 (ligD_2)
DNA repair and recombination proteins [BR:
csal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NBC122_02419 (ligD_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBO59223
UniProt:
A0A4P6ZHP1
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All DBs
Position
2612744..2614615
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AA seq
623 aa
AA seq
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MLAQTGEKAFDNKDWVFEIKWDGYRAVADLRESVIQFYSRNGLSYSDKFSKIVNALDHQN
HQMVLDGEIVAFNKEGKPDFQILQKIGENRDLAMTYQIFDLLWLNGHSTENLTLVQRKEL
LKDALTENDVVKYCEHIPENGIDFFEQIKKMELEGMIAKKADSIYSEGVRSSDWLKIKLQ
NTEDVLICGFTEPNGARKNFGALILGTFTDGQLKYCGHAGTGFSDKILDSLHELFKPLMI
ENCPFEEVPKTNAPATWLKPELVCEIKYTEKTQDEIFRHPVYLGLRSDKDKEDLMNEKEE
EIENSSSLKIEINESKVQRDSTKVKTKMTKAVTLTNQNKIYFPESGITKGEVIAYYQSIA
KYILPHLKNRPQSLNRFPNGIGGLSFYHKDAGNDAPDWIEKVSIFSESNEKNIEYLICNT
PDDLAYLNNLGCIDLNPWNSTVTDLGKPTWLALDLDPSEKNTFDQVIETALCVKEILDLA
KIKGFCKTSGSSGIHIFIPMAAQYEVELVKNFAHLLMQKVQQKLPDLTTLERNLKKRDKN
KIYLDYLQNRTGQTLASVYSVRPKPFAPVSMPLLWEELKSCLKPTDFNIHNALERIKKNG
DLFKPVLGKGIDMLKALKILSEI
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgcaaacgggagaaaaagcctttgacaataaagattgggttttcgaaattaaa
tgggatggttatcgtgctgtagctgatttaagggaatctgtaattcaattttattcccgg
aacggactctcctattctgataaattttcgaaaatcgttaacgctttagatcatcaaaat
catcagatggttttagacggtgaaatcgttgcttttaataaagaaggaaaacctgatttt
caaatcttacaaaaaataggagaaaatcgggatttggcgatgacatatcagattttcgat
ttgctttggctcaatgggcattccactgaaaatttaactttagttcaacgtaaagaattg
ctgaaagatgctttaacagaaaatgatgtggttaaatattgtgagcatattcccgaaaat
ggaattgatttttttgagcaaatcaaaaagatggaattagaaggaatgattgcaaaaaaa
gcagacagtatttattcggaaggtgttcgttcgtcagactggctgaaaataaaattacag
aatacagaagatgttctaatttgtggatttacagaaccgaacggtgcccggaagaatttc
ggtgcgctgattctgggaacttttaccgatggtcaattaaaatattgcggtcatgccggg
acaggtttttctgataaaattttagattctttgcatgaattgtttaaaccgttaatgatc
gaaaactgtccgtttgaagaagttccaaaaaccaacgctccagcgacctggctgaaaccg
gaattggtttgtgaaataaaatataccgaaaaaacacaagatgaaattttccgacatccc
gtttatctgggacttcgcagtgataaagacaaggaggatttaatgaatgaaaaagaagaa
gagattgagaattcatcttcattaaaaattgaaattaatgaaagcaaagttcaaagagat
tcaacaaaagtgaaaacgaagatgacgaaagccgttactctgaccaatcaaaacaaaatc
tatttcccggaaagtggcattacgaaaggagaagttattgcgtattaccaatctatagcg
aaatatattttaccccatttaaaaaaccgtccgcaatcactgaaccgttttccgaacgga
atcggcggtttaagtttttatcacaaagatgccggaaacgacgcccctgactggattgag
aaagtttcaatcttttcggaatcgaatgaaaaaaacattgaatatttaatctgcaataca
ccagatgatttggcttatttaaataatttaggctgtatcgatttgaatccctggaattct
acggtaacagatttgggtaaaccaacctggctggctctggatttggatccgtcagagaaa
aacacttttgaccaggttattgaaactgctttgtgtgtaaaagagattttggatttagca
aaaattaaaggcttttgcaaaacttccggaagttcgggaattcatattttcattcccatg
gctgcgcagtatgaggtcgaactggtgaaaaatttcgcccatcttttaatgcagaaagtg
cagcaaaaactacccgatctaactactttagagaggaatttgaaaaaacgggataagaat
aaaatttatctggattatctgcaaaaccgcaccggtcagacgttagcgagtgtttacagc
gttcgtccaaaacctttcgcaccggtctcaatgcctttactttgggaagaactgaagtct
tgtttaaaacccaccgatttcaatattcataatgctttggagcgtattaaaaagaatggc
gatttgtttaaaccggttttaggaaaaggaattgatatgttgaaagctttgaaaattctc
tctgaaatttaa
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