Corynebacterium sanguinis: E3227_00290
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Entry
E3227_00290 CDS
T06569
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csan
Corynebacterium sanguinis
Pathway
csan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3227_00290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csan03400
]
E3227_00290 (mfd)
Enzymes [BR:
csan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3227_00290 (mfd)
DNA repair and recombination proteins [BR:
csan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3227_00290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
MFD_D3
RecG_dom3_C
CbiX
Motif
Other DBs
NCBI-ProteinID:
QDR76659
LinkDB
All DBs
Position
complement(51553..55128)
Genome browser
AA seq
1191 aa
AA seq
DB search
MTTTVPALGGLLTVALTDPKLKGLLSNIGQDHLHVMGIDQTRPWAAAALSRKVPVLLVTA
TGHEAEDLTAELAALIRPENVAHFPALETLPHERLSPAADVVGRRFKVLHEMPRVIVAAA
RAVCQPVLPVIDPIVIARDHEYDFTQLTESIARFAYEHVDMVAKRGEFATRGGLIDVFPT
TAEHPVRIEFWGDEVTDIRTFAVADQRGIDEVDSVELFPARQLLIDDPVAARADELARAH
PQNATLVQMLTRISQGHHADGMEALIPALTDKPFQVLPELLPKGSIVLVTAPEKVRARIE
DLEVTDKEFLEAGWEAAAMGAEGPVAVEGLDVSASSYRSFESLRVSTLKAGSSWWTFAPP
GMFAADDTATLPLEFEPAPAPKGDPKAIEQLFATVKLHVQSNNGTAAFVAPAKGTVERFA
ERLREHGISARIASDGLEPVTGQVTLYQALSHAGLVFPGPNMVVVTETDVTGNRVGDIAG
AKRRAPRRRNRVDPLALSPGDYVVHETHGIGRFVKMAERTVHTGDEDSRREYIVLEYQPA
KRGQPNDQLWVPMESLDLLSKYSGGEQPSLSKMGGSDWKSTKRKARAAVREIAAELVQLY
AKRQAAPGHAFAPDTPWQAEMEDNFPFVETEDQLLAIGAVKDDMEKPTPMDRVIVGDVGF
GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFSTRMDGFGVTIRELSRFTSAKES
KETLAGLADGSVDVVIGTHRLLATGVQWKNLGLIVVDEEQRFGVEHKEHIKALKSHVDVL
TMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQIAAAIRRELLRDGQI
FYIHNKVADIEKAARRVRELVPEARVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVE
TGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLAT
IAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVDTYKALMTG
ETVDATDQGPKEIRIDLPVDAHIPDTYVNSERLRLEIYRKLAESRDDADLATVTEEMVDR
FGPLPREVEHLVAVARLRQQARSAGVSDILVQGSRIKFQPVELQDSKQVRLKRLYPGANY
RAAAKALQVPLPRAAAGVNQPTLRDTELVQWVSDFLADMFGVDKKVVTASE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccgtgcccgcattgggtgggctgcttactgttgcgctgacggacccgaag
ctcaagggcctgctgagcaatatcggccaggatcatctccacgtcatggggatcgaccag
acccgcccgtgggccgcggccgcgttgtcgcgcaaggtcccggtgctgttggtcaccgcg
acggggcatgaggccgaggatctcaccgcggagttggcggcgctgatcagaccggagaat
gtcgcgcatttccccgcgctggagacgctgccgcacgagcggctctccccggcggcggat
gtggtgggcaggcgcttcaaggtcttgcacgagatgccgcgggtgatcgtcgcagctgcg
cgcgcggtgtgccagccggtgttgccggtcatcgacccgatcgtgatcgcccgcgatcac
gagtacgacttcacgcagctcacggagtcgatcgcgcgattcgcgtacgagcacgtcgac
atggtggcaaagcgcggtgagttcgcgacccgcggcggcctaatcgacgttttcccaacc
accgccgagcacccggtgcgcatcgagttctggggcgacgaggtcacggacatccgcacc
ttcgcggtggcggatcagcgcggcatcgacgaggtcgactccgtcgagcttttccccgct
cgccagttgcttatcgacgaccccgtggccgcacgcgccgacgagctcgcccgcgcgcac
ccgcagaacgccacgctcgtgcagatgctgacccggatttcccaggggcaccacgccgac
ggcatggaggcgctcatcccggcgctgaccgacaagcccttccaggtgcttcccgagctg
ttgccgaaggggtcgatcgtgctggtcacggcgccggaaaaggtccgcgcccgcatcgaa
gaccttgaggtcaccgacaaggagttcctcgaggccggctgggaggcggcggcgatgggg
gcggagggtcccgtcgcggtggaggggctcgacgtctcggcgtcgtcgtatcgctccttc
gagtcgctgcgcgtctcgacgcttaaggcgggcagtagctggtggacgttcgcgcctccc
ggcatgtttgccgcagacgacacggcgaccctgccgctggagttcgaacccgcgcccgcc
ccgaagggcgatccgaaggcgatcgagcagctcttcgccactgtcaagctgcacgtgcag
agcaacaacggcaccgccgccttcgtcgccccggccaaaggcacggtggagcgcttcgct
gagcggctgcgcgagcacgggatctcggcgcgcatcgcctcggacgggctcgaaccggtg
accggccaggtcacgctctaccaagcgttgtcgcacgcgggtttggtgttcccggggcca
aacatggtcgttgtcactgagaccgatgtgacaggtaaccgcgtaggcgatatcgcgggc
gcgaagcggcgcgccccgcggcggcgcaacagggtcgacccgctcgcgctgagccccggc
gattacgtggtgcacgagacccacggcattggccggtttgtaaagatggccgagcgcacc
gtccacacgggcgacgaggactcgcgccgcgagtacatcgtgcttgagtaccagccggcg
aagcgcggccagcccaacgaccagttgtgggtgccgatggagtcgctggacttgctgtca
aagtattccgggggtgagcagccgtcgttaagcaaaatgggcggctccgactggaagagc
accaagcgcaaggcgcgcgcggcggtgcgggagatcgcggctgagttggtgcagctttac
gccaagcgccaggccgcgccgggccacgcgttcgcgccggacacgccgtggcaggcggag
atggaggacaactttccgttcgtggagacggaggaccagctcctcgcgatcggcgcggtt
aaggacgacatggagaagccgacgccgatggatcgggtgatcgtgggtgacgtcggcttc
ggcaagaccgaggtcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtc
gcggtgctcgtgccgaccacccttctggcgcagcagcactattcgacgttctccacccgc
atggacggcttcggcgtgaccatccgcgagctgtcgcgttttacctcggcgaaggagtcg
aaggagacgctcgctgggcttgccgacggctccgttgacgtcgtcatcggcacccaccgc
ctgctggctaccggcgtgcagtggaagaacctgggcctcatcgtggtcgatgaggagcag
cgcttcggcgtcgagcacaaggagcacatcaaggcgctaaagtcgcacgtcgacgtgctc
accatgacggcgacgccaatcccgcgcaccctggagatgtcgctgaccgggatccgcgag
atgacgtcgatcacgactccgccggaggaccgccacccggtgctgacttacgtcggcccg
caggaggataaacagatcgcggcggcgattcggcgcgagctgctgcgcgatggccagatt
ttctacatccacaacaaggtcgccgacattgaaaaggccgcgcggcgcgtgcgcgagctt
gtccccgaggcgcgcgtcgtggtggcgcacggccagatgtcggagcagctgctcgagcag
acggtgcaggggttctggaaccgcgagtacgacgtgctcgtgtgcaccacgatcgtggaa
acgggcctggatatcgccaacgccaacaccctgatcgtggaaaacgcccaaaacatgggc
ctgtcccagctgcatcagctgcgcggccgcgtcggtcgttcccgcgatcgcgcctacgcc
tacttcctgtatccgaaggacaagacgctgaccgagacttcgtacgaccgcttggcgacg
atcgcgcagaacaacgacctgggctccggtatcgcggtggcgcaaaaggacctggagatg
cgcggcgccggcaacgtgctgggcgcggagcagtcggggcacatcgcgggtgtcggcttc
gatatgtatgtccggctcgttggggaggccgtcgatacgtacaaggcgctcatgaccgga
gagacggtggatgccaccgaccagggcccgaaggagatccgcatcgatttgcctgtcgac
gcccacatcccggacacctacgtcaactccgagcgcctgcgtctggagatttaccgcaag
cttgccgagtcacgcgatgacgccgacttggcgaccgtcaccgaggaaatggtcgaccgc
ttcggcccactcccgcgcgaggtcgagcacctcgttgccgtagcccgcttgcgtcagcag
gcccgttccgccggggtgtctgacatcttggtgcagggctcgcgcatcaagttccagccg
gtggagctgcaggactcgaagcaggtgcggctcaaacgcctgtacccgggcgcgaactac
cgcgccgcggccaaggcgctgcaggtgccgctgccacgcgccgccgctggtgtgaatcag
ccgaccctgcgcgataccgagcttgtgcagtgggtgtccgacttccttgcggatatgttc
ggggtggacaagaaggtggttactgcgagcgagtaa
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