Corynebacterium sanguinis: E3227_11055
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Entry
E3227_11055 CDS
T06569
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csan
Corynebacterium sanguinis
Pathway
csan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E3227_11055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csan03400
]
E3227_11055
Enzymes [BR:
csan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E3227_11055
DNA repair and recombination proteins [BR:
csan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E3227_11055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QDR78524
LinkDB
All DBs
Position
complement(2293739..2295994)
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AA seq
751 aa
AA seq
DB search
MKFQVDGRSLNVTSLNKVLYPSTGTTKADVMHYYLSVAEVMIPQVTRRPVTRKRWPDGVE
GESFFRKDLEDSAPEWVTVGEIEHSTSVNRYPLVDAPSTLAWFAQVAALELHTPQWRFAP
DGSHANPDRMVLDLDPGPGVTMAQTAQVALWCREILDGMGMECVPVTSGSKGIHLYAALD
GTYDSDTVSKVAKALARGLEEDYPDRVTSVMKKTSREGKVFLDWSQNNGSKTTVAPYSLR
GRERPMVAAPRTWEEIEDPALKHLDFEEVLARVEDGIDPMAPLGAPVVDRLATYRSMRDP
RKTAEPVPQEAPMLRDGEPIFVIQEHHARRLHWDVRIEHEGVLVSWAVPKGPPEDPKENR
LAVQTEDHPVEYATFEGTIAKGEYGAGEMSIWDSGTVEIEKWREGEEVIAVFRGSGGPRR
YALIHTNGKNWLMKLMAKQPSSQPKSLTPMLATMGSAGDLTLGEKDGVRYEFEMKWDGYR
ILAFVDGGKVTLRSRAGKDYTHLFPHANEIAEVLGGDGVLDGELVALDEQGRPNFSLLHA
ADREGSDAELRYMAFDVLEVGGRSMVGEAYTGRREAMEALEETEHVAIPPRFTGSFETAE
QASRTLGLEGVMAKRADSVYTPGERSRAWLKLKTQLHQEVVVVGVRTGKRAVSSLLVAVP
NADGELTYAGRVGTGFSAAQLRDIEKKLRAAERKTPPIEVPDSDAKDAWWVTPKFVAEVQ
VAGKTGGGSLRQASWRGWREDKEPADVRWEM
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttccaggtcgacggccgcagcctcaacgtcacgagcctgaacaaggtgctctac
ccgtccaccggcacgacgaaggcggacgtgatgcactactacctctccgtcgctgaggtt
atgatcccccaggtcacgcggcgcccggtgacccgcaagcgctggccggacggggtagag
ggggagagcttcttccgcaaggacctcgaggattcggcgccggagtgggtcaccgtcggc
gagatcgagcactcgacctcggtgaataggtacccgcttgtcgacgccccctccaccctc
gcctggttcgcccaagtcgccgccttggagctgcacaccccgcagtggcgcttcgcgccg
gacggctcgcacgccaaccccgacaggatggtgctggatttggaccccgggccgggtgtg
accatggcgcagacggcgcaggtggcgctgtggtgccgggagatcctcgacggcatgggc
atggagtgcgtgccggtgacgtctgggtcgaagggcatccacctctacgccgcgctggac
ggcacttacgactccgacaccgtgtccaaggtggcgaaggcgttggcccgcggattggaa
gaggactacccggacagggtgacgtcggtgatgaagaaaacttcgcgcgagggcaaggtg
tttctggattggagccagaacaatgggtcgaagacgacggtggcgccgtactccctgcgc
gggcgcgagcggcccatggtggcggcgccgaggacgtgggaggaaatcgaggaccctgct
cttaagcacctggacttcgaggaagtcctcgcgcgtgtggaggacggcattgacccgatg
gcgccgctgggcgcgccggtcgtcgacaggctggccacctaccgctccatgcgcgacccg
cgcaagaccgcggagccggtcccgcaggaggcaccgatgctacgcgacggggagccgatc
tttgtcatccaggagcaccacgcgcgccgcctgcactgggacgtgcgcatcgagcacgag
ggtgtgctggtgtcctgggctgtgccgaaggggccgccagaggacccgaaggagaaccgg
ttggcggtgcagaccgaagatcacccggtcgagtacgccaccttcgaaggcacgattgcc
aagggagagtacggcgccggcgagatgagcatctgggattcgggcaccgtggagattgag
aagtggcgcgagggggaggaggtcatcgccgtgttccgcggcagtggcgggccccgccgc
tacgcgctcatccacaccaacgggaagaactggctgatgaagctgatggcaaagcagcct
agttcgcagccaaagtcgctgacgcccatgctcgcgacaatgggtagcgcgggggatttg
acactgggcgagaaggacggggtgcgctacgagttcgagatgaaatgggacggctaccgc
atcctcgcgttcgtggacgggggcaaggtcacgctgcgcagcagggcgggcaaggactac
acccacctgttcccccacgccaatgaaatcgccgaggtgcttggcggcgacggcgtgttg
gacggcgagcttgtcgcccttgatgagcaggggcgccccaacttctcgctgctgcacgca
gcggaccgggaagggtccgacgcggagctgcgctacatggcgttcgacgtgctggaggtc
ggagggcgctcgatggtgggggaggcgtacacggggcgtcgagaagctatggaggcattg
gaggagacagagcatgtggcgatcccgccgaggtttaccggttccttcgaaacggcggag
caggcgagccgcacgctcggcctggagggggtgatggcgaagcgggcggactcggtgtac
accccgggcgagcgctcgagagcctggctgaagctgaagacacagctgcatcaggaggtg
gttgtcgtgggcgtgaggaccggcaagcgcgcagtatcgtcgctgctcgtggcggtgccc
aacgccgacggtgagttgacctatgccgggcgggtgggcaccggtttcagcgccgcgcag
ttgagagacatcgagaaaaagttgcgcgcagctgagcgcaaaaccccgccaattgaagtg
ccggattcggacgcgaaggacgcgtggtgggtcacgccgaagttcgtggccgaggtgcag
gtggctggcaaaaccggtggcggcagcctgaggcaggcgtcgtggcgcggctggcgcgag
gacaaggaaccggccgacgttcgctgggagatgtga
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