KEGG   Corynebacterium sanguinis: E3227_11055
Entry
E3227_11055       CDS       T06569                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
csan  Corynebacterium sanguinis
Pathway
csan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E3227_11055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csan03400]
    E3227_11055
Enzymes [BR:csan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E3227_11055
DNA repair and recombination proteins [BR:csan03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E3227_11055
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QDR78524
LinkDB
Position
complement(2293739..2295994)
AA seq 751 aa
MKFQVDGRSLNVTSLNKVLYPSTGTTKADVMHYYLSVAEVMIPQVTRRPVTRKRWPDGVE
GESFFRKDLEDSAPEWVTVGEIEHSTSVNRYPLVDAPSTLAWFAQVAALELHTPQWRFAP
DGSHANPDRMVLDLDPGPGVTMAQTAQVALWCREILDGMGMECVPVTSGSKGIHLYAALD
GTYDSDTVSKVAKALARGLEEDYPDRVTSVMKKTSREGKVFLDWSQNNGSKTTVAPYSLR
GRERPMVAAPRTWEEIEDPALKHLDFEEVLARVEDGIDPMAPLGAPVVDRLATYRSMRDP
RKTAEPVPQEAPMLRDGEPIFVIQEHHARRLHWDVRIEHEGVLVSWAVPKGPPEDPKENR
LAVQTEDHPVEYATFEGTIAKGEYGAGEMSIWDSGTVEIEKWREGEEVIAVFRGSGGPRR
YALIHTNGKNWLMKLMAKQPSSQPKSLTPMLATMGSAGDLTLGEKDGVRYEFEMKWDGYR
ILAFVDGGKVTLRSRAGKDYTHLFPHANEIAEVLGGDGVLDGELVALDEQGRPNFSLLHA
ADREGSDAELRYMAFDVLEVGGRSMVGEAYTGRREAMEALEETEHVAIPPRFTGSFETAE
QASRTLGLEGVMAKRADSVYTPGERSRAWLKLKTQLHQEVVVVGVRTGKRAVSSLLVAVP
NADGELTYAGRVGTGFSAAQLRDIEKKLRAAERKTPPIEVPDSDAKDAWWVTPKFVAEVQ
VAGKTGGGSLRQASWRGWREDKEPADVRWEM
NT seq 2256 nt   +upstreamnt  +downstreamnt
gtgaagttccaggtcgacggccgcagcctcaacgtcacgagcctgaacaaggtgctctac
ccgtccaccggcacgacgaaggcggacgtgatgcactactacctctccgtcgctgaggtt
atgatcccccaggtcacgcggcgcccggtgacccgcaagcgctggccggacggggtagag
ggggagagcttcttccgcaaggacctcgaggattcggcgccggagtgggtcaccgtcggc
gagatcgagcactcgacctcggtgaataggtacccgcttgtcgacgccccctccaccctc
gcctggttcgcccaagtcgccgccttggagctgcacaccccgcagtggcgcttcgcgccg
gacggctcgcacgccaaccccgacaggatggtgctggatttggaccccgggccgggtgtg
accatggcgcagacggcgcaggtggcgctgtggtgccgggagatcctcgacggcatgggc
atggagtgcgtgccggtgacgtctgggtcgaagggcatccacctctacgccgcgctggac
ggcacttacgactccgacaccgtgtccaaggtggcgaaggcgttggcccgcggattggaa
gaggactacccggacagggtgacgtcggtgatgaagaaaacttcgcgcgagggcaaggtg
tttctggattggagccagaacaatgggtcgaagacgacggtggcgccgtactccctgcgc
gggcgcgagcggcccatggtggcggcgccgaggacgtgggaggaaatcgaggaccctgct
cttaagcacctggacttcgaggaagtcctcgcgcgtgtggaggacggcattgacccgatg
gcgccgctgggcgcgccggtcgtcgacaggctggccacctaccgctccatgcgcgacccg
cgcaagaccgcggagccggtcccgcaggaggcaccgatgctacgcgacggggagccgatc
tttgtcatccaggagcaccacgcgcgccgcctgcactgggacgtgcgcatcgagcacgag
ggtgtgctggtgtcctgggctgtgccgaaggggccgccagaggacccgaaggagaaccgg
ttggcggtgcagaccgaagatcacccggtcgagtacgccaccttcgaaggcacgattgcc
aagggagagtacggcgccggcgagatgagcatctgggattcgggcaccgtggagattgag
aagtggcgcgagggggaggaggtcatcgccgtgttccgcggcagtggcgggccccgccgc
tacgcgctcatccacaccaacgggaagaactggctgatgaagctgatggcaaagcagcct
agttcgcagccaaagtcgctgacgcccatgctcgcgacaatgggtagcgcgggggatttg
acactgggcgagaaggacggggtgcgctacgagttcgagatgaaatgggacggctaccgc
atcctcgcgttcgtggacgggggcaaggtcacgctgcgcagcagggcgggcaaggactac
acccacctgttcccccacgccaatgaaatcgccgaggtgcttggcggcgacggcgtgttg
gacggcgagcttgtcgcccttgatgagcaggggcgccccaacttctcgctgctgcacgca
gcggaccgggaagggtccgacgcggagctgcgctacatggcgttcgacgtgctggaggtc
ggagggcgctcgatggtgggggaggcgtacacggggcgtcgagaagctatggaggcattg
gaggagacagagcatgtggcgatcccgccgaggtttaccggttccttcgaaacggcggag
caggcgagccgcacgctcggcctggagggggtgatggcgaagcgggcggactcggtgtac
accccgggcgagcgctcgagagcctggctgaagctgaagacacagctgcatcaggaggtg
gttgtcgtgggcgtgaggaccggcaagcgcgcagtatcgtcgctgctcgtggcggtgccc
aacgccgacggtgagttgacctatgccgggcgggtgggcaccggtttcagcgccgcgcag
ttgagagacatcgagaaaaagttgcgcgcagctgagcgcaaaaccccgccaattgaagtg
ccggattcggacgcgaaggacgcgtggtgggtcacgccgaagttcgtggccgaggtgcag
gtggctggcaaaaccggtggcggcagcctgaggcaggcgtcgtggcgcggctggcgcgag
gacaaggaaccggccgacgttcgctgggagatgtga

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