Camelina sativa (false flax): 104705075
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Entry
104705075 CDS
T05044
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104705075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104705075
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104705075
mRNA degradation factors
5'-3' decay
Decapping complex
104705075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104705075
NCBI-ProteinID:
XP_010419368
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All DBs
Position
7:complement(29471264..29474923)
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AA seq
833 aa
AA seq
DB search
MDAFGIGSSINHAPVTDDLKKFGDNPTGNTMFDASQYAFFGNDVVEEVELGGLEEEDEIL
SFTGLGDDFSFDKEEVENSRSLSNVDDLASTFSKLNREPDVYRNTGPITDRRSIQNPLAA
EWTHGEELPNWYGRKILDSDAIKDDKVWSAQPFSSRDLVEQRNPDRTTLYPEPQRHLHQV
HNQQQLPSEPILVPKSSFVSFPPPGSISPDQRLGHPNIPYHSGGPPMGSPNFSSFPTLQP
QLPGMHHGSPQHAGNMPQFRPALPLNNRPPGQWMNRQNIHPGDGSGIMNNAMLQQPPHQN
GLMPPQMQGSQNRLPHPMQHPLGHMSGGQPQLFNSHLSRSSSSGNYDGTLGFVDPREARP
GSGHGNRQNMRFHQQGYDGGVQRRYSGWPPFRSKYMSADEIENILRMQLVATHSNDPYVD
DYYHQACLAKKSAGAKLKHHFCPNHLRDLQQRARTNNEPHAFLQVDALGRVPFSSIRRPR
PLLEMDPPNSTKPGNAEHKATDKPLDQEPMLAARVYIEDGLCLLLEVDDIDRYLEFNQLP
DGGHQLKQRRQSLLESLADSLQLADPLAKNGESRSHDDFLFLRIVSLPKGRKLLTRYLQL
IFPGSDLMRIVCMAIFRHLRSLFGVLSSDADITKTTNKLAKVINLCINNMELGSVSVCLA
AVSCSSEQPPLRPLGSPVGDGASTVLKSILDRAAELTRENNFNNAVMALWRASFNEFFNL
VMKYCISKYESIMQSLNSQLPPHFATEISDAATQAIAREMPIELLRASFPHIDEQQKRIL
LEFIKGSMHGSQKTEPVLLGXNRLKKAIRVIELMVSSGIIPDASAXCADTRKK
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggacgcttttggaattgggagtagtataaatcatgctccagtaaccgacgatcttaag
aaatttggagataatcctacaggtaatacaatgtttgatgcatctcagtatgcctttttt
gggaacgatgttgtcgaggaggttgagcttggtggattggaagaggaagatgagatttta
tctttcactggattaggggatgacttctcatttgataaggaagaggttgaaaattctaga
tctctgtccaacgttgatgatcttgctagtactttttcaaagttgaatagggagcctgat
gtctatagaaacacggggccaatcactgataggcgatcaatacagaatcctttagctgct
gagtggacccatggggaggagttgccaaattggtacggccggaaaatactggactctgat
gccattaaagatgacaaggtgtggtcagcacagcctttttcatctcgggaccttgttgag
cagagaaatcctgacagaacaacattgtatccggaaccacagcgtcacctgcatcaagtc
cataatcaacaacagctacccagcgaaccaattcttgtcccgaagtcatcttttgtttca
ttccctcctccaggcagcatatcaccagatcagcggttaggacaccctaatataccatat
cattctggtgggcctccaatgggatccccaaacttctcttcttttccaactttgcagcct
cagttgcctggcatgcatcatggatcaccgcagcatgctggaaacatgcctcagtttcgt
cctgctcttcctctaaataatcgccctccaggtcaatggatgaatcgtcaaaatattcat
cctggggatggttccggtatcatgaataatgcgatgctacaacagccgcctcatcaaaac
ggtttgatgcctccacagatgcagggttctcagaataggttaccacatccgatgcagcat
cctcttgggcatatgtctggaggacagcctcagttatttaactcccatctttctcgatca
tcatcctctggaaattatgatggaacccttgggtttgttgatccaagggaagcaagacca
ggatcaggtcatgggaacagacagaacatgcgttttcaccaacagggttatgatggtggc
gttcagagaagatatagtgggtggcctccgttccgatctaaatatatgtcagctgatgag
atagagaatatactgagaatgcagcttgttgctacacacagcaatgatccttacgttgat
gattactatcatcaagcctgtcttgctaagaaatctgcgggtgcaaaactgaaacatcat
ttttgtccaaatcatttgagggacctccaacagcgtgcacggacaaacaacgagccccat
gcttttcttcaggttgatgctcttggtagggttcctttctcttcaatccgcaggcctcgt
ccacttcttgaaatggaccctccaaattcaactaaacctggtaatgcggagcataaagct
accgataagccccttgatcaagaaccgatgcttgcagctagagtgtacattgaggatggt
ctttgtctcctccttgaagttgatgatatagatcgttacttagagtttaaccaactcccg
gacggaggacaccagttgaaacaaagacggcaatctttgttggagagcctcgcagattca
cttcagctcgctgatcctcttgccaagaatggggaaagccggtctcatgatgattttctc
tttctaaggattgtctctcttccaaagggtcggaaactactgacaaggtatcttcagctt
attttccctggcagcgacctaatgcggatagtttgcatggccattttccgtcatttaagg
tcattgtttggagtcctctcatctgacgccgatatcaccaaaaccacaaacaagcttgcg
aaagttataaacctgtgcattaacaacatggagttaggatcagtaagcgtgtgtctagca
gcggtgtcttgttcttctgagcagccaccgctccgtcccttaggcagcccggttggagac
ggagcttccacggtactgaaatcaatactcgacagagctgccgaacttaccagggaaaat
aatttcaacaacgcagtcatggctctatggcgcgcttcctttaacgagttctttaatctg
gtgatgaagtactgcataagcaaatacgagagcatcatgcagagtttgaattcacaattg
ccaccgcattttgccacggagatatctgatgcagctacacaagctattgcccgcgaaatg
ccaatagagcttctacgtgcaagtttcccacacattgatgagcagcagaagagaatactt
ttggagtttattaaagggtctatgcacggaagccagaaaaccgagccagtcttattaggt
tncaatagattgaagaaagctattcgtgtcattgagcttatggttagctccgggattata
cccgatgcctctgcttnctgcgcagatacccgcaagaagtga
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