KEGG   Camelina sativa (false flax): 104705075
Entry
104705075         CDS       T05044                                 
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104705075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104705075
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104705075
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104705075
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 104705075
NCBI-ProteinID: XP_010419368
LinkDB
Position
7:complement(29471264..29474923)
AA seq 833 aa
MDAFGIGSSINHAPVTDDLKKFGDNPTGNTMFDASQYAFFGNDVVEEVELGGLEEEDEIL
SFTGLGDDFSFDKEEVENSRSLSNVDDLASTFSKLNREPDVYRNTGPITDRRSIQNPLAA
EWTHGEELPNWYGRKILDSDAIKDDKVWSAQPFSSRDLVEQRNPDRTTLYPEPQRHLHQV
HNQQQLPSEPILVPKSSFVSFPPPGSISPDQRLGHPNIPYHSGGPPMGSPNFSSFPTLQP
QLPGMHHGSPQHAGNMPQFRPALPLNNRPPGQWMNRQNIHPGDGSGIMNNAMLQQPPHQN
GLMPPQMQGSQNRLPHPMQHPLGHMSGGQPQLFNSHLSRSSSSGNYDGTLGFVDPREARP
GSGHGNRQNMRFHQQGYDGGVQRRYSGWPPFRSKYMSADEIENILRMQLVATHSNDPYVD
DYYHQACLAKKSAGAKLKHHFCPNHLRDLQQRARTNNEPHAFLQVDALGRVPFSSIRRPR
PLLEMDPPNSTKPGNAEHKATDKPLDQEPMLAARVYIEDGLCLLLEVDDIDRYLEFNQLP
DGGHQLKQRRQSLLESLADSLQLADPLAKNGESRSHDDFLFLRIVSLPKGRKLLTRYLQL
IFPGSDLMRIVCMAIFRHLRSLFGVLSSDADITKTTNKLAKVINLCINNMELGSVSVCLA
AVSCSSEQPPLRPLGSPVGDGASTVLKSILDRAAELTRENNFNNAVMALWRASFNEFFNL
VMKYCISKYESIMQSLNSQLPPHFATEISDAATQAIAREMPIELLRASFPHIDEQQKRIL
LEFIKGSMHGSQKTEPVLLGXNRLKKAIRVIELMVSSGIIPDASAXCADTRKK
NT seq 2502 nt   +upstreamnt  +downstreamnt
atggacgcttttggaattgggagtagtataaatcatgctccagtaaccgacgatcttaag
aaatttggagataatcctacaggtaatacaatgtttgatgcatctcagtatgcctttttt
gggaacgatgttgtcgaggaggttgagcttggtggattggaagaggaagatgagatttta
tctttcactggattaggggatgacttctcatttgataaggaagaggttgaaaattctaga
tctctgtccaacgttgatgatcttgctagtactttttcaaagttgaatagggagcctgat
gtctatagaaacacggggccaatcactgataggcgatcaatacagaatcctttagctgct
gagtggacccatggggaggagttgccaaattggtacggccggaaaatactggactctgat
gccattaaagatgacaaggtgtggtcagcacagcctttttcatctcgggaccttgttgag
cagagaaatcctgacagaacaacattgtatccggaaccacagcgtcacctgcatcaagtc
cataatcaacaacagctacccagcgaaccaattcttgtcccgaagtcatcttttgtttca
ttccctcctccaggcagcatatcaccagatcagcggttaggacaccctaatataccatat
cattctggtgggcctccaatgggatccccaaacttctcttcttttccaactttgcagcct
cagttgcctggcatgcatcatggatcaccgcagcatgctggaaacatgcctcagtttcgt
cctgctcttcctctaaataatcgccctccaggtcaatggatgaatcgtcaaaatattcat
cctggggatggttccggtatcatgaataatgcgatgctacaacagccgcctcatcaaaac
ggtttgatgcctccacagatgcagggttctcagaataggttaccacatccgatgcagcat
cctcttgggcatatgtctggaggacagcctcagttatttaactcccatctttctcgatca
tcatcctctggaaattatgatggaacccttgggtttgttgatccaagggaagcaagacca
ggatcaggtcatgggaacagacagaacatgcgttttcaccaacagggttatgatggtggc
gttcagagaagatatagtgggtggcctccgttccgatctaaatatatgtcagctgatgag
atagagaatatactgagaatgcagcttgttgctacacacagcaatgatccttacgttgat
gattactatcatcaagcctgtcttgctaagaaatctgcgggtgcaaaactgaaacatcat
ttttgtccaaatcatttgagggacctccaacagcgtgcacggacaaacaacgagccccat
gcttttcttcaggttgatgctcttggtagggttcctttctcttcaatccgcaggcctcgt
ccacttcttgaaatggaccctccaaattcaactaaacctggtaatgcggagcataaagct
accgataagccccttgatcaagaaccgatgcttgcagctagagtgtacattgaggatggt
ctttgtctcctccttgaagttgatgatatagatcgttacttagagtttaaccaactcccg
gacggaggacaccagttgaaacaaagacggcaatctttgttggagagcctcgcagattca
cttcagctcgctgatcctcttgccaagaatggggaaagccggtctcatgatgattttctc
tttctaaggattgtctctcttccaaagggtcggaaactactgacaaggtatcttcagctt
attttccctggcagcgacctaatgcggatagtttgcatggccattttccgtcatttaagg
tcattgtttggagtcctctcatctgacgccgatatcaccaaaaccacaaacaagcttgcg
aaagttataaacctgtgcattaacaacatggagttaggatcagtaagcgtgtgtctagca
gcggtgtcttgttcttctgagcagccaccgctccgtcccttaggcagcccggttggagac
ggagcttccacggtactgaaatcaatactcgacagagctgccgaacttaccagggaaaat
aatttcaacaacgcagtcatggctctatggcgcgcttcctttaacgagttctttaatctg
gtgatgaagtactgcataagcaaatacgagagcatcatgcagagtttgaattcacaattg
ccaccgcattttgccacggagatatctgatgcagctacacaagctattgcccgcgaaatg
ccaatagagcttctacgtgcaagtttcccacacattgatgagcagcagaagagaatactt
ttggagtttattaaagggtctatgcacggaagccagaaaaccgagccagtcttattaggt
tncaatagattgaagaaagctattcgtgtcattgagcttatggttagctccgggattata
cccgatgcctctgcttnctgcgcagatacccgcaagaagtga

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