Camelina sativa (false flax): 104707644
Help
Entry
104707644 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104707644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104707644
03019 Messenger RNA biogenesis [BR:
csat03019
]
104707644
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104707644
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104707644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104707644
NCBI-ProteinID:
XP_010422326
LinkDB
All DBs
Position
8:20346480..20350211
Genome browser
AA seq
836 aa
AA seq
DB search
MESEKLLNPRLLSINSSTTGRKAMSVELPQKPPPPPSLLDRFKALLNQREDEFGGGEEVL
PPVMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHSEGIANAICTRILEAPVEQKL
PSLYLLDSIVKNIGRDYVRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFPPPVL
RKIEVQLQLSSATNQQSSLGASEPAQPARGIHVNPKYLRRLEPSATESNLRGINSSARVY
GQNSLGGYDDFDDQLESPSSRSGPRSGTAGSVALSSSVIGADGFPKRFSDGAIPSNQAFK
YGMGRPTGRDDEHMEWRRKENLGQGNDHERPRALIDAYGIDTSKHVTISKPIRDMNGIHS
KMVTPWQNTEEEEFDWEDMSPTLDRSRAGEYLRSSNPALGSVRARPRVGNTSDFHLDSDI
KNGGSHQLRESWNLSQNFPHSSSRVNTRAGKDLKVLTSSMGLVSSNSEFGAPPFDSIQDI
NSRFGRALPDGTWPHLSVRGSNSLSVPSAHLHHLANPGNAMSNRLHGKPLYRPENQVPQS
HLNDMNQQNQMLVNYLPSSSGMNPRPMQSLLPHVSHGYPPQGSTIRPSLSIHGGEAMHPL
SSGALSQIGSISQNASLGASSQQPGGAFSGLIGSLMAQGLISLNNQPTGQGSLGIEFDAD
MLKVRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWF
VSGSMWLSGAEALGAEAVPGFLPTEPTIEKKDDEEMAVPADEDQTSCALCGELFEDFYSD
ETEEWMYKGAVYMNAPDGSTEDLDKSQLGPIVHAKCRPESNGGDMEEGSQRKKLRS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagaaactcctcaatccaaggcttctttcgattaatagcagcaccactggt
cgcaaagcgatgtccgttgagttgccgcagaaaccgccgccaccgccgtcgttgcttgac
agattcaaggctctgcttaatcagcgtgaagatgagttcggtggtggtgaggaggttttg
cctccggttatggatgagattgttcagctttatgaggttgttttgggagagcttactttt
aattccaagcctattattactgatctcactattatcgctggtgaacaacgggaacacagt
gaaggaatcgctaatgccatttgcactcgaatccttgaggcgccagttgagcaaaagttg
ccttctctgtatctattagacagcatcgttaagaacattggacgggattatgttcgttat
ttctcatcccgtctaccagaggtcttctgtctagcatacaggcaagcgcatccgagttta
catccttcaatgcgccatctgtttgggacttggtcaagtgtttttccaccgcctgtacta
cgcaagattgaagtgcaattgcaactttcgtctgcaacaaaccaacagtcttcgttaggg
gcttctgagcctgctcaaccagctaggggcattcatgttaatccaaaataccttcgtagg
cttgagccctcagccaccgaaagtaatttgagaggcataaattctagtgcaagagtttat
ggccaaaattcactcggtggatatgatgattttgacgatcagttagagagcccatcttcc
cggtctggaccaaggtctggtacagctggaagtgtggcactctcgtcttctgtaattgga
gcagatggttttcccaagaggttcagtgatggagctattccttctaatcaagcctttaaa
tatggaatgggtcgacctactggcagagatgatgaacatatggaatggcgaagaaaggaa
aacttaggacaaggaaatgatcatgaaagacctagagctttgatagatgcatatggaatt
gacaccagcaaacacgtaaccatcagtaaaccaattcgcgatatgaatggcatccacagt
aagatggttacaccatggcagaacactgaggaagaagagttcgattgggaagatatgagc
cctaccctagatcgtagcagagccggtgaatatttgcgatcatctaacccagcattagga
agtgtaagagcaagacccagagtaggaaacacaagtgattttcatttagattctgacatt
aagaatggtggaagtcatcagctacgagaaagctggaatttgtcacaaaatttcccccat
tcatccagccgtgttaataccagagcaggaaaggacttgaaagtattgacttcatcaatg
ggattagtttcatcaaacagtgaatttggggctcctccatttgatagcattcaagatatt
aactcacgttttggtcgtgctcttcctgatgggacgtggccccatttgagtgttagagga
tccaactctctctctgtaccttcagctcacttgcatcatttggcaaatcctggtaatgcg
atgtcaaatcggttgcatggtaagcctttatataggcccgagaaccaggtcccccagagt
catcttaatgatatgaatcaacagaatcagatgctagttaattatttgccttcttcatct
ggtatgaatccaaggccgatgcaatctttgttaccccacgtaagtcatgggtaccctcca
caagggtcgaccattagaccatccttatcaatccatggtggggaagccatgcatcctctt
tcttcaggggctttatctcaaataggatccatctctcaaaatgcttctctgggagcctct
agtcaacagccgggcggcgcattctctggtctgattggctctctcatggctcaaggtttg
atttcgttgaacaatcagcctactggtcagggatcactgggaattgaatttgatgcggac
atgctcaaggtacgtaatgagtctgcaatcagtgctctatatggggatctccctaggcaa
tgcacaacatgtggtctacgcttcaagtgccaagaagagcacagtaagcacatggattgg
catgtaaccaagaacaggatgtccaagaatcataagcagaatccttctcggaaatggttt
gtaagtggtagtatgtggcttagtggtgcagaggcacttggagctgaagcagtaccaggg
ttcttacccacagagccaacaatagaaaagaaggatgatgaagagatggcagttcctgca
gatgaagaccaaacttcatgtgctttatgtggtgaactatttgaagacttttatagtgat
gaaactgaggaatggatgtacaaaggggcggtgtacatgaatgctccagacggatcaaca
gaagatttggacaagtctcaattaggccctatagtacatgctaagtgcaggccagagtca
aatgggggtgatatggaagagggtagtcagagaaaaaagttgcggagttag
DBGET
integrated database retrieval system
