Camelina sativa (false flax): 104716385
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Entry
104716385 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104716385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104716385
03019 Messenger RNA biogenesis [BR:
csat03019
]
104716385
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104716385
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104716385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104716385
NCBI-ProteinID:
XP_010432065
LinkDB
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Position
2:complement(3250807..3254601)
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AA seq
840 aa
AA seq
DB search
MESEKLLNPRLLSINSSTTTNTTGRKAMSVELPQKPPPPPSLLDRFKALLNQREDEFGGG
EEVLPPVMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAICTRILEAPV
EQKLPSLYLLDSIVKNIGRDYVRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFP
PPVLRKIEVQLQLSSATNQQSSLGASEPTQPTRGIHVNPKYLRRLEPSAAESNLRGINSS
ARVYGQNSLGGYDDFDDQLESPSSLSGPRSGTAGSVALSSSVTGADGFPKRFSDGAIPSN
QAFKYGMGRPTGRDDEHMEWRRRENLGQGNDHERPRALIDAYGIDTSKHVTISKPIRDMN
GIHSKMVTPWQNTEEEEFDWEDMSPTLDRSRAGEYLRSSNPALGSVRARLRVGNTSDFHL
DSDIKNGGSHQLRENWNLSQNFPHSSNRVNTRAGKDLKVLTSSMGLVSSNSEFGAPPFDS
IQDINSRFDRALPDGTWPHLSVRGSNSLPVPSAHLHHLGNPGNAMSNRLHGKPLYRPENQ
VSQSHLNDINQQNQMPVNYLPSSSAMNPRPMQSLLPHVSHGYPPQGSTIRPSLSIHGGEA
MHPLSSGVLSQIGSISQNASLGASSQQPGGAFSGLIGSLMAQGLISLNNQPTGQGSLGIE
FDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPS
RKWFVSGSMWLSGAEALGAEAVPGFLPTEPTIEKKDDEEMAVPADEDQTSCALCGELFED
FYSDETEEWMYKGAVYMNAPEGSIEDLDKSQLGPIVHAKCRPESNGGDMEEGSQRKKMRS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagaaactcctcaatccaaggcttctttcgattaatagcagtaccaccacc
aacaccactggtcgcaaagcgatgtccgttgagttgccgcagaaaccgccgccgccgccg
tcgttgcttgaccgattcaaggctctgcttaatcagcgtgaagatgagttcggtggtggt
gaggaggttttgcctccggttatggatgagattgttcagctttatgaggttgttttggga
gagcttacttttaattccaagcctattattactgatctcactattatcgctggtgaacaa
cgggaacacggtgaaggaatcgctaatgccatttgcactcgaatcttagaggctccagtt
gagcaaaagttgccttctctgtatctattagacagcatcgttaagaacattggacgggat
tatgttcgttatttctcatcccgtctaccagaggtcttctgtctagcatacaggcaagcg
catccgagtttacatccttcaatgcgccatctgtttgggacttggtcaagtgtttttcca
ccgcctgtactacgcaagattgaagtgcaactgcaactttcatctgcaacaaaccaacag
tcttcgttaggggcttctgagcctactcaaccaactaggggcattcatgttaatccaaaa
taccttcgtaggctggagccctcagctgctgaaagtaatttgagaggcataaattctagt
gcaagagtgtatggccaaaattcactcggtggatatgatgattttgacgatcagttagag
agcccatcttccttgtctggaccaaggtctggtacagctggaagtgtggccctctcgtct
tctgtgactggagcagatggttttcccaagaggttcagtgatggagctattccttctaat
caagcctttaaatatggaatgggtcgacctactggcagagatgatgaacatatggaatgg
cgaagaagggaaaacttaggacaaggaaatgatcatgaaagacctagagctttgatagat
gcatatggaattgacaccagcaaacacgtaaccataagtaaaccaattcgcgatatgaat
ggcatccacagtaagatggttacaccatggcagaacactgaggaagaagagttcgattgg
gaagatatgagccctaccctagatcgtagcagagccggtgaatatttgcgatcatctaac
ccagcattaggaagtgtaagggctagactcagagtaggaaacacaagtgattttcattta
gattctgacattaagaatggtggaagtcatcagctacgagaaaactggaatttgtcacaa
aatttcccccattcatccaaccgtgttaatacaagagcaggaaaggacttaaaagtattg
acttcatctatgggattagtttcatcaaacagtgaatttggggctcctccatttgatagc
attcaagatattaactcacgttttgatcgtgctcttcctgatgggacgtggccccatttg
agtgttagaggatccaactctctccctgtaccttcagctcacttgcatcatttgggaaat
cctggtaatgcgatgtcaaaccgcttgcatggtaagcctttatataggcccgagaaccag
gtctcccagagtcatcttaatgatataaatcaacagaatcagatgccagttaattatttg
ccttcttcatctgctatgaatccaaggccgatgcaatctttgttaccccacgtaagtcat
gggtaccctccacaaggttcgaccattagaccatccttatcaatccatggtggggaagcc
atgcatcctctttcatcaggggttttatctcaaataggatccatctctcaaaatgcttct
ctgggagcctctagtcaacagccgggcggcgcattctctggtctgattggctctctcatg
gctcaaggtttgatttcgttgaacaatcagcctactggtcagggatcattgggaattgag
tttgatgcggacatgctcaagatacgtaatgagtctgcaatcagtgctctatatggggat
ctccctaggcaatgcacaacatgtggtctacgcttcaagtgccaagaagagcacagtaag
cacatggattggcatgtaaccaagaacaggatgtccaagaatcataagcagaatccttct
cggaaatggtttgtaagtggtagtatgtggcttagtggtgcagaggcacttggagctgaa
gcagtaccagggttcttacccacagagccaacaatagaaaagaaggatgatgaagagatg
gcagttcctgcagatgaagaccaaacttcatgtgctttatgtggtgagctatttgaagac
ttttatagtgatgaaactgaggaatggatgtacaaaggggcggtgtacatgaatgctcca
gaaggatcaatagaagatttggacaagtctcagttaggtcctatagtgcatgcaaagtgc
aggccagagtcaaatgggggtgatatggaagagggtagtcagagaaaaaagatgcggagt
tag
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