Camelina sativa (false flax): 104734985
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Entry
104734985 CDS
T05044
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104734985
09122 Translation
03013 Nucleocytoplasmic transport
104734985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104734985
03041 Spliceosome [BR:
csat03041
]
104734985
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104734985
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104734985
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104734985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
CarD_C
CENP-X
DUF3005
Motif
Other DBs
NCBI-GeneID:
104734985
NCBI-ProteinID:
XP_010452987
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All DBs
Position
13:3902365..3906855
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AA seq
621 aa
AA seq
DB search
MISKYRYDYNSGCILIPALWFFSKDEFRDAILQRAPIESFALKTVQEFIQPQKQTKLAQD
ENQMLENMLRSLLQELVAAAAQSGDDQIMQYGQLIDDDQNIHGQIPHLLDVVLYLCEKEH
VEGGMIFQLLEDLTEMSTMKNCKDVFGYIERKQDILGKQELFARGKLVMLRTCNQLLRRL
SKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPNGISVDFNFYKTF
WSLQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEDAATFNIKY
LTSSKLMGLELKDSSFRRHILLQCLILFDYLRAPGKNDKDLPSETMEELKSCEDRVKKLL
EITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPLEKQPIEKKSPNAGQKKRRQRWRMGN
KELSQLWRWADQNPNALTDSQRVRTPAIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWK
GLRFAARQDLEGFSRFTDFGIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSQE
AEGNQIGVSNSEAEAEAEGGRGEAEAMESDAIADTPTPEEQQRLGGSDTDNGQEAGQIED
AETEEAGLMDADLDHPPMPVS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgaaatacagatatgattataatagtggttgtatccttatacctgctttgtgg
ttcttctccaaggatgaatttagagatgctatattgcagcgagctccaattgaaagcttt
gccctcaagactgttcaagagtttatacaacctcagaaacaaacaaagttggctcaagat
gaaaaccagatgcttgaaaacatgctccggtcattactacaggagctagtggctgctgct
gcgcaatcaggagatgatcagattatgcagtatggtcagttgattgatgatgatcaaaat
atacatggccagattcctcatcttctagatgtggtgctttatctttgtgagaaagagcat
gttgaaggtggcatgatattccagctgttggaggatttgacggaaatgtctactatgaaa
aactgtaaagatgttttcggctatattgaaaggaaacaagatatattgggcaagcaagag
ctttttgcgcgcggaaaacttgtaatgttgaggacttgtaaccaacttctccggcgactc
tcaaaggccaatgacgtggtattctgtggaagaatcctcatgttcttggctcactttttt
cctttatctgagcgatcagccgtgaacattaaaggcgtttttaatacatctaacgaaacc
aaatatgaaaaagatcctccaaatggcatttctgtagatttcaacttctataagacattt
tggagtttacaggagtatttctgtaatcccgcttctcttacttctgcatctaccaagtgg
cagaaattttcatctagtttggcggttgtattaaacacctttgacgcacaaccactaagc
gaagaagagggagaggctaatagtttggaggaagatgcagcaacttttaatataaagtac
ttaactagtagtaaattaatgggtttagagttaaaggattcgagtttccgacgacatatt
cttctccagtgcctcatactgtttgattatctgagggcaccagggaagaacgacaaagat
ctgccatctgaaaccatggaagagcttaagtcatgtgaggatcgcgtaaagaaattgctt
gagatcactccgcctaaaggaaaagaattcctccgtgcagttgagcatatattggagcgc
gaaaagaattgggtctggtggaaacgtgatggatgcccaccacttgaaaagcaaccgata
gaaaagaaatcaccgaatgcagggcaaaagaaacggaggcaaagatggagaatggggaat
aaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgattct
caacgtgtccgaacccctgccattgcagactactggaaaccattagcagaagatatggac
ccgtcagctggcatcgaagatgagtaccatcataaaaacaacagagtttactgctggaaa
ggtcttaggtttgcagctcggcaagacctggaaggattttcgaggtttactgattttgga
atcgaaggagttgtccctgttgaactattgccacctgaggtccgctccaaatatcaagct
aaaccgaacgaaaaggcgaaacgagcgaagaaagaagaaaccaaaggtggatctcaggaa
gcagagggaaaccagattggtgtttctaatagtgaagctgaagctgaagctgaaggagga
agaggcgaagcagaggcgatggaaagtgatgctattgcagacacacctacacctgaggaa
caacaaagactcggtggttctgacacagacaacggtcaagaggccggtcaaatcgaagac
gcagagacagaagaagctggtttgatggacgctgatcttgatcatcctcctatgcctgtc
tcgtga
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