Camelina sativa (false flax): 104760197
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Entry
104760197 CDS
T05044
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104760197
03015 mRNA surveillance pathway
104760197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104760197
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104760197
5.6.2.5 RNA 5'-3' helicase
104760197
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104760197
mRNA cycle factors
Common to processing body (P body) and stress granule
104760197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
nSTAND3
SLFN-g3_helicase
DEAD
Viral_helicase1
UvrD-helicase
Helicase_RecD
PhoH
ATPase
AAA_16
SRP54
Ribosomal_S13_N
AAA_22
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
104760197
NCBI-ProteinID:
XP_010481386
LinkDB
All DBs
Position
18:complement(915616..923947)
Genome browser
AA seq
1248 aa
AA seq
DB search
MDSQQSDLFDTVSQPDTVADAYNFLEFDTQGDSEFDYPEFGSPTAWPTPSDSISIADASD
RGGGGAAADHHSEASSPSSLSAGAGNGAKAGRGGVSSSSQVDALAAGIGNLNLEETGDDD
GFDYGQNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKDMNWDLS
QWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDD
EPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVF
PKEENELRLVPGDELRLRYSGDAAHSAWQSVGHVIKLTAQEEVALELRANQGVPIDVNHG
FSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGL
PELNASQVNAAKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAGKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNVRFKQVLIDESTQATEPEC
LIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHP
ALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPMPNRPMFFYVQLGQEEISASGTSYLN
RTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLIYGGGAGMMGNDNFGSGNPNA
DRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPMPRVPLSPFPGGPPSQPYAIPTRGPVGV
VPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPNLNFPLDSPNSQPSPVGPLSQ
PGYGSQAFRDGFSMGGISQDFLSDDVKSQGSHGPYDMADFSTQASQGGYAVDYATQGAHG
AFPGNFMNQNSQGGYSRFSGNNDFMSQEYMAHGGQGLFTQAGFIDTSQDDGQQNPFGVNN
PNLQSQGLPNSLYSQPFSHYNTQPLNLSGPQQSQPNQTSQNPKHPYNG
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagagcgatctctttgacaccgtatcgcagcctgacacggtggccgac
gcgtataactttttggaattcgatactcaaggtgattcggagtttgattacccggagttt
ggatcaccgacggcatggcctaccccatctgattctatttccatcgctgacgcttccgat
cgtggtggaggaggagctgccgcggatcatcattccgaggcttcgtctccttcttccctc
tctgccggtgccgggaatggtgcaaaagcgggacgtggtggtgttagtagtagtagtcag
gttgatgcattggccgctggtatcggaaatttgaacttggaggagactggagatgatgat
ggtttcgattatggtcagaatgatttcacggagcacgcttgtaagtattgtggtatctcg
aaccctgcttgtgtggttaggtgtaatgtggcttcctgtagaaagtggttctgcaattca
agggggaacacctcgggctcgcatattgtgaatcatctggttcgagctaaacacaaggaa
gtttgtctccatagagacagtccactaggggaaacaattcttgaatgctacaactgtggg
tgtcgaaatgtctttctcctcggtttcatctcagcaaagacagacagtgtcgtcgtcctt
ctctgtagagatccttgtttaaatgttaatgccctcaaggatatgaactgggacctaagt
cagtggtgtcccttgattgacgataggtgtttcctcccctggcttgttaaggtcccatca
gagcaggaacagctgcgggcacgccaaattagcgcacagcaaataaacaagatagaggaa
ttatggaagacaaatccggatgctactcttgaagaccttgaaaaacctggtgtagacgat
gaacctcagcctgttcaacctaagtatgaagatgcatatcagtatcaaaatgtgtttgca
cctctaatcaagcttgaagcagactatgacaagatgatgaaagagtctcaaagcaaggaa
aacctcacagttcggtgggatattggtcttaacaagaagcgtgttgcatacttcgtcttc
ccgaaggaggaaaatgaattacgattggttccgggtgatgaactacgtctgcgctactca
ggagatgctgctcattcagcctggcaatcagttggacatgtgatcaagctaacggcacaa
gaggaggttgctcttgaactccgagctaatcagggagttcctattgacgtgaaccatgga
ttcagtgttgattttgtttggaaaagtacaagctttgatcgaatgcagggagcaatgaag
aactttgcggtagatgaaacaagtgtgagtggttatatttaccatcagttgctcggacat
gaagttgaggcgcagatggttcgtaacacactacctagacgttttggggtacctggtctt
ccagaactgaatgcatctcaggttaatgcggcaaaaagtgtccttcagaagcccatcagc
ttgatccaaggtccacctggcacgggtaaaactgtgacttctgcagcaattgtgtatcac
atggcaaaacagggccagggacaggttctcgtttgtgccccaagtaatgttgctgtagac
caactagctggaaaaattagtgctactggtttaaaggttgttcgcctttgtgcaaaatca
agggaagctgtaagttctcctgtagagcatttaacccttcactaccaggtacgacatttg
gacacatctgagaagagcgagctgcataagctacagcagttgaaagatgaacaaggtgag
ctgtcgagcagtgatgaaaagaaatacaaaaacttgaaaagagcaacagaacgtgagata
acccagagtgctgatgtcatatgctgcacgtgtgttggtgctgcggatcttcggttgtca
aacgttagatttaaacaggtacttattgatgagtctactcaagcaacagaacctgagtgc
cttattcctttggtccttggagtaaaacaggttgttcttgttggtgatcattgtcagctt
ggccccgtcattatgtgcaagaaagcagctcgtgctggcttggcacagtctctctttgaa
cgacttgtgcttcttggtatcaaaccaatcagattgcaggttcaatatcgtatgcatcca
gctttgtccgagttcccatctaacagcttctatgaaggaactctacagaatggagtcaca
attattgagaggcaaacaacagggattgatttcccatggcctatgcctaaccggcccatg
tttttctatgttcagctgggacaagaggagatcagtgctagtggaacatcgtatcttaat
agaactgaggctgctaatgtggagaaacttgtgactgctttcttaaagagtggagttgtc
cccagtcagattggtgtgataactccatatgagggacaaagggcatacattgttaattac
atggcaagaaatggttctctccgacagcaactttacaaggaaattgaggttgccagtgtt
gattcttttcaaggaagggaaaaagattacatcatattgtcctgtgtgagaagtaacgag
catcagggcattggattccttaatgatccacggaggctcaacgttgcacttacgcgtgct
cgttatggaatagttattctcggaaacccgaaggttcttagtaaacagcctctgtggaat
ggattgttgacacattacaaggaacacgagtgtttggtcgaaggacctcttaataattta
aagcagagcatggtacagtttcagaaaccaagaaagatttacaatgatcggaggctaatt
tatggtggtggcgctggcatgatgggaaatgataattttggttcgggtaatcctaatgct
gacagaagaggcagtcgaggaagggctggtggttcctatcttccttctggcccacctaat
ggtgctagacctggactacacccagctggctacccgatgcctagggttccactttcaccc
tttcccggtggtcctccttctcagccatacgctattccaactcgtggacctgtgggtgtt
gttcctcatgctcctcaacctggaaatcatggttttggagctggtcgtgggacttcagtt
ggaggccatcttccgcaccaacaagctacccaacataatgttggaactattggccctaat
ctaaacttcccgcttgatagtccaaatagccagccttcacctgttggtccgctatcccaa
cctggatatggtagccaagcattcagggatggattttctatgggtggcatatcacaggat
ttcttgagtgatgatgttaagagccagggatctcatggtccttacgacatggctgacttt
tctacacaggcctcacaaggtggatatgctgttgattacgccacacaaggagcacatggg
gcgtttcctggaaacttcatgaaccagaattctcaaggtggctattctcgtttcagcgga
aataatgatttcatgtctcaggagtacatggcacatggaggtcaaggtcttttcacccaa
gctggctttatcgacacatcccaggatgatggacaacaaaatccttttggtgtgaacaat
cctaatctccagtctcagggtctcccaaattcgctttactcgcagcctttctcacactac
aacacacagccactaaacctttcaggcccacagcaatctcaacctaaccagacgtcacaa
aacccaaaacatccttacaatggctga
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