Camelina sativa (false flax): 104761792
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Entry
104761792 CDS
T05044
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104761792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104761792
Enzymes [BR:
csat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104761792
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104761792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
104761792
NCBI-ProteinID:
XP_010483217
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All DBs
Position
18:complement(15424982..15432221)
Genome browser
AA seq
1220 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKTKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLINWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLATSENRGEKTSVLSTLIQKTNAQEMKWVVRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVIAECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYVHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVRPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADR
AEANVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKSEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTHDNPKVNKSSKREKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIF
YFVNVPRSYSVDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSW
ILDCCSRNKMLPLQPKYFLHLTEASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSD
DLKSIEYYKKKLCPEKRWSCLFGCCVYFYPYSETLSTEEEALLAIMAKRLAFEVLMGGGK
VSNNLANASHLVVLAITEDSLDFTSVSKNFSEVEKRLLLKRRLHVVNSHWLEDSLQREQK
LCEDVYTLRPKYMEESDTEESDKSEHDITEVASCGSAQIEEPASSKMEIRSSRGRSSTRA
VKRGRSSTNSTHRVQRRRGKQPSKIGGDEKEESDASEEKVSTRLSDIAEETDSFGGAQRN
SSRGESAKRGKSRVAQTQRVQRSRRGKKASKIGGDESEENDGFDDIDNVSADAEESNAAG
RSVENEEPREPNIAMHTESLHKENTVAVEEASEDSRNAKTEMGMKEKLQIHEDPLQAMLM
NMIPSLSQKNTETSNRITGENRNANVSYDCESSERRKLGAETDDTSVNAGADAEADTVPP
PAKKKKVSYRDVAGELLKDW
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagcgttttagtatctctcttcaactggatccaaaaaacc
aaaacctcatctcagaaacgctccaaattccgcaagtttctcgacacttactgcaaaccc
tcagactacttcgtcgccgtacggctcatcatcccgtcgcttgatagggaacgaggtagt
tacggtctcaaggagtcagtgctcgccacgtgtctgatcgacgcgcttggcatctctcgc
gacgctcctgacgctgttcgtcttatcaattggcgtaaaggaggaaccgctaaagctggt
gccaatgctggaaacttttccttaattgctgctgaggtattgcaacgtagacaaggaatg
gcttcaggtggtttgactattaaggaattgaatgatttgcttgatcgtttggctacaagt
gagaacagaggggagaaaacttctgttctttctactctgattcagaagacaaatgctcag
gagatgaagtgggtcgttaggataattttaaaagatttgaaactgggaatgagcgagagg
agcatatttcaggagttccatccagatgctgaggacttgttcaatgttacgtgtgacttg
aaactagtttgtgaaaagttgagggatcgacaccaacggcacaagcgccaggatatagag
gtaggaaaagccgtacgacctcagttagctatgcgtatcagtgatgtaaatgctgcttgg
aagaagctacatgggaaagatgtaattgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacactattactctaggaacttccttgaccattctgaa
tacgtgcatgccatgtcggatcttattgtacaaaatatattggtggacaagtgcatcctt
gatggggaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcgaat
caggaaatagccaaggcagcaagggaaggtcttgacagccatagacagctgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaaaaaagtggtcaggcctttaaaaggtcgtctagaagttttagtacct
gaaggtggtctcaatgttcaccgcccttcaggggaacctagttggtctattgttgtccat
gctgctgctgatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatatccgagctggttctgaccttgatgttcttataataggaggatac
tatggctccggacgccgtggaggggaggtagcacagtttctcgtcggcttggctgaccgg
gcggaggcaaatgtgtatcctaggcgatttatgtccttttgtagagttggcactggactt
tctgatgaagaacttaacactgttgtaagcaaactgaagccttatttcagaaaaagtgaa
cacccaaagaaggctccaccaagcttctaccaggtcacaaaccactcaaaagagagacca
gatgtttggattgagagcccagagaaatcaataatactttcaatcactagtgatatcagg
acaataaggtctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtctcgatgtgcaggcttttgtggaattggtg
aattcgagtaacggcaccacacagaaacagaaggaatctgaaagcacacatgacaatcca
aaagtcaataaatcctccaagagagagaaaaagaatgtgtcgcttgtcccttctcagttt
attcaaactgatgtatcggatatcaagggcaagacctcaatcttctcaaatatgatattt
tattttgttaatgtgcctcggtcctattctgttgatacatttcacaaaatggtagttgag
aatggaggaaagttctcaatgaacttaaacaactcagtaactcattgcattgcagcggaa
agcagtggaataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttcatgg
atcttagattgttgttcacgaaataagatgcttcctttgcagccaaagtacttcctccac
ctcactgaggcttcaaggacaaaattacaggatgacattgatgaattctcggattcttat
tactgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatccgat
gacttaaaatccattgaatactacaagaaaaagttatgtccagagaaaagatggtcctgc
ctctttggctgctgtgtttacttttacccgtatagtgaaacattgagcactgaagaggaa
gctctgttggcaattatggctaagagattagcgttcgaagtcttaatgggtggtggtaaa
gttagcaataatcttgctaatgcgtcgcaccttgtagtccttgctataacagaagactct
ttggattttacttcagtttcaaaaaatttcagcgaagtggagaagcgccttctgttgaag
agaaggctacacgttgttaactctcactggttagaagacagcttgcaaagagagcaaaaa
ctttgcgaggacgtctacactctgaggcctaagtatatggaagagtctgatactgaagaa
tcagataaatctgaacatgatataacggaagtagcttcctgtggtagtgctcaaatcgaa
gagccagcttcctctaaaatggaaattagaagttcaagaggacggtcaagtactcgagct
gttaaaaggggaaggtcttctacaaactcaacgcatcgagtacagagacgcagaggcaag
cagccttctaagataggcggggacgaaaaagaggagagtgatgcttctgaagaaaaagtt
tcaacacgactcagtgatatagcagaagagactgattcgttcggtggggctcaaagaaac
tctagcagaggagaatctgcaaagagaggaaagtctcgtgtggcacaaactcaaagagta
cagagatcacgaagaggcaagaaggcttcgaagattggaggagatgagtctgaggaaaat
gatggttttgatgacatagacaatgtgtcagcagatgcagaagagagtaatgcagctggt
agatcagtggaaaacgaagaacctcgagagcctaacatagcaatgcacacagaatcactg
cataaagagaacacagtagcagttgaagaggcctcagaagattctagaaatgcaaagacc
gagatgggtatgaaagagaagttacaaatccatgaggatccactacaagctatgttaatg
aacatgatcccgagcctcagtcagaaaaacacagagacatcaaaccgaattaccggggaa
aatagaaacgctaatgtatcttatgattgtgagtcttcggagagaaggaaactcggcgcc
gagactgatgatacttctgtgaacgcaggcgcagacgcagaggcagacacagttcctcct
cctgcgaagaaaaagaaagtcagctaccgggatgttgctggagaactgctcaaagactgg
taa
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