KEGG   Camelina sativa (false flax): 104769177
Entry
104769177         CDS       T05044                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03013  Nucleocytoplasmic transport
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104769177
  09122 Translation
   03013 Nucleocytoplasmic transport
    104769177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104769177
   03041 Spliceosome [BR:csat03041]
    104769177
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     104769177
Spliceosome [BR:csat03041]
 Complex C
  Other components
   EJC/TREX
    104769177
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104769177
SSDB
Motif
Pfam: efThoc1 CarD_C CENP-X DUF3005
Other DBs
NCBI-GeneID: 104769177
NCBI-ProteinID: XP_010491629
LinkDB
Position
20:3999363..4004562
AA seq 602 aa
MDEFRDAILQRAPIESFALKTVQEFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQS
GEQIMQYGQLIDDDDDDQNIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKN
CKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP
LSERSAVNIKGVFNTSNETKYEKDPPNGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQ
KFSSSLAVVLNTFDAQPLSEEEGEANSLEEDAATFNIKYLTSSKLMGLELKDSSFRRHIL
LQCLILFDYLRAPGKNDKDLPSETMVSEELKSCEDRVKKLLEITPPKGKEFLRAVEHILE
REKNWVWWKRDGCPPFEKQPIEKNSPNAGQKKRRQRWRMGNKELSQLWRWADQNPNALTD
SQRVRTPAIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFAARQDLEGFSRFTDF
GIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSQEAEGNQIGVSNSEAEAEAEG
GRGEAEAMESDAIADTPTPEEQQRLGGSDTDNGQEAGQIEDAESEEAGLMDADLNHPPMP
VS
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggatgaatttagagatgctatattgcaacgagctccaattgaaagctttgccctcaag
actgttcaagagtttatacaacctcagaaacaaacaaagttggctcaagatgaaaaccaa
atgcttgaaaacatgctccggactttactacaggagctagtggctgctgctgcgcaatca
ggagaacaaattatgcagtatggtcagttgattgatgatgatgatgatgatcaaaatata
catggccagattcctcatcttctagatgtggtgctttatctttgtgagaaggagcatgtt
gaaggtggcatgatattccagctcttggaggatttgacggaaatgtctactatgaaaaac
tgtaaagatgtttttggttatattgaaagcaaacaagatatattgggcaagcaagagctt
tttgcgcgcggaaaacttgttatgttgaggacttgtaaccaacttctccgccgactctca
aaggccaatgacgtggtattctgtggaagaatcctcatgttcttggctcacttttttcct
ttatctgagcgatcagccgtgaacataaagggcgtttttaatacatctaacgaaaccaaa
tatgaaaaagatcctccaaatggcatttctgtagatttcaacttctataagacattttgg
agtttacaggagtatttctgtaatcccgcttctcttacttctgcatctaccaagtggcag
aaattttcatctagtttggcggttgtattaaacacctttgacgcacaaccactaagcgaa
gaagagggagaagctaatagtttggaggaagatgcagcaacttttaatataaagtactta
actagtagtaaattaatgggtttagagttaaaggattcgagtttccgacgacatattctt
ctccagtgcctcatactgtttgattatctgagggcaccagggaagaacgacaaagatctg
ccatctgaaaccatggttagtgaagagcttaagtcctgtgaggatcgcgtaaagaaattg
cttgagatcactccgcctaaagggaaagaattcctccgtgctgttgagcatatattggag
cgcgaaaagaattgggtctggtggaaacgtgatggatgcccaccatttgaaaagcaaccg
atagaaaagaactcacctaatgcagggcaaaagaaacggaggcaaagatggagaatgggg
aataaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgat
tctcaacgtgtccgaacccctgctattgcagactactggaaaccattagcagaagatatg
gacccgtcagctggcatcgaagatgagtaccatcataaaaacaacagagtttactgctgg
aaaggtcttcggtttgcagctcggcaagacctggaaggattttcgaggtttactgatttt
ggaatcgaaggagttgtccctgttgaactattgccacctgaggtccgctccaaatatcaa
gctaaaccgaacgaaaaagcgaaacgagcgaagaaagaagaaaccaaaggtggatctcag
gaagcagagggaaaccagattggtgtttctaatagtgaagctgaagctgaagctgaagga
ggaagaggcgaagcagaggcgatggaaagtgatgctattgcagacactcctacacctgag
gaacaacaaagactcggtggttctgacacagacaatggtcaagaggctggtcaaatcgaa
gacgcagagtcagaagaagctggtttgatggacgctgatcttaatcatcctcctatgcct
gtctcgtga

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