Camelina sativa (false flax): 104769177
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Entry
104769177 CDS
T05044
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104769177
09122 Translation
03013 Nucleocytoplasmic transport
104769177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104769177
03041 Spliceosome [BR:
csat03041
]
104769177
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104769177
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104769177
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104769177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
CarD_C
CENP-X
DUF3005
Motif
Other DBs
NCBI-GeneID:
104769177
NCBI-ProteinID:
XP_010491629
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All DBs
Position
20:3999363..4004562
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AA seq
602 aa
AA seq
DB search
MDEFRDAILQRAPIESFALKTVQEFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQS
GEQIMQYGQLIDDDDDDQNIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKN
CKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP
LSERSAVNIKGVFNTSNETKYEKDPPNGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQ
KFSSSLAVVLNTFDAQPLSEEEGEANSLEEDAATFNIKYLTSSKLMGLELKDSSFRRHIL
LQCLILFDYLRAPGKNDKDLPSETMVSEELKSCEDRVKKLLEITPPKGKEFLRAVEHILE
REKNWVWWKRDGCPPFEKQPIEKNSPNAGQKKRRQRWRMGNKELSQLWRWADQNPNALTD
SQRVRTPAIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFAARQDLEGFSRFTDF
GIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSQEAEGNQIGVSNSEAEAEAEG
GRGEAEAMESDAIADTPTPEEQQRLGGSDTDNGQEAGQIEDAESEEAGLMDADLNHPPMP
VS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatttagagatgctatattgcaacgagctccaattgaaagctttgccctcaag
actgttcaagagtttatacaacctcagaaacaaacaaagttggctcaagatgaaaaccaa
atgcttgaaaacatgctccggactttactacaggagctagtggctgctgctgcgcaatca
ggagaacaaattatgcagtatggtcagttgattgatgatgatgatgatgatcaaaatata
catggccagattcctcatcttctagatgtggtgctttatctttgtgagaaggagcatgtt
gaaggtggcatgatattccagctcttggaggatttgacggaaatgtctactatgaaaaac
tgtaaagatgtttttggttatattgaaagcaaacaagatatattgggcaagcaagagctt
tttgcgcgcggaaaacttgttatgttgaggacttgtaaccaacttctccgccgactctca
aaggccaatgacgtggtattctgtggaagaatcctcatgttcttggctcacttttttcct
ttatctgagcgatcagccgtgaacataaagggcgtttttaatacatctaacgaaaccaaa
tatgaaaaagatcctccaaatggcatttctgtagatttcaacttctataagacattttgg
agtttacaggagtatttctgtaatcccgcttctcttacttctgcatctaccaagtggcag
aaattttcatctagtttggcggttgtattaaacacctttgacgcacaaccactaagcgaa
gaagagggagaagctaatagtttggaggaagatgcagcaacttttaatataaagtactta
actagtagtaaattaatgggtttagagttaaaggattcgagtttccgacgacatattctt
ctccagtgcctcatactgtttgattatctgagggcaccagggaagaacgacaaagatctg
ccatctgaaaccatggttagtgaagagcttaagtcctgtgaggatcgcgtaaagaaattg
cttgagatcactccgcctaaagggaaagaattcctccgtgctgttgagcatatattggag
cgcgaaaagaattgggtctggtggaaacgtgatggatgcccaccatttgaaaagcaaccg
atagaaaagaactcacctaatgcagggcaaaagaaacggaggcaaagatggagaatgggg
aataaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgat
tctcaacgtgtccgaacccctgctattgcagactactggaaaccattagcagaagatatg
gacccgtcagctggcatcgaagatgagtaccatcataaaaacaacagagtttactgctgg
aaaggtcttcggtttgcagctcggcaagacctggaaggattttcgaggtttactgatttt
ggaatcgaaggagttgtccctgttgaactattgccacctgaggtccgctccaaatatcaa
gctaaaccgaacgaaaaagcgaaacgagcgaagaaagaagaaaccaaaggtggatctcag
gaagcagagggaaaccagattggtgtttctaatagtgaagctgaagctgaagctgaagga
ggaagaggcgaagcagaggcgatggaaagtgatgctattgcagacactcctacacctgag
gaacaacaaagactcggtggttctgacacagacaatggtcaagaggctggtcaaatcgaa
gacgcagagtcagaagaagctggtttgatggacgctgatcttaatcatcctcctatgcct
gtctcgtga
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