Camelina sativa (false flax): 104771972
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Entry
104771972 CDS
T05044
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104771972
03015 mRNA surveillance pathway
104771972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104771972
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104771972
5.6.2.5 RNA 5'-3' helicase
104771972
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104771972
mRNA cycle factors
Common to processing body (P body) and stress granule
104771972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
nSTAND3
DEAD
SLFN-g3_helicase
UvrD-helicase
Viral_helicase1
Helicase_RecD
PhoH
ATPase
AAA_16
SRP54
Ribosomal_S13_N
AAA_22
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
104771972
NCBI-ProteinID:
XP_010494909
LinkDB
All DBs
Position
20:29172270..29181704
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AA seq
1248 aa
AA seq
DB search
MDSQQSDLFDTVSQPDTVADAYNFLEFDTQGDSEFDYPEFGSPTAWPTPSDSISIADASD
RGGGGAAADHHSEASSPSSLSAGAGNGAKAGRGGVSSSSQVDALAAGIGNLNFEETGDDD
GFDYGQNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKDMNWDLS
QWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDD
EPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVF
PKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPIDVNHG
FSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGL
PELNASQVNAAKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAGKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFKQVLIDESTQATEPEC
LIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHP
ALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPMPNRPMFFYVQLGQEEISASGTSYLN
RTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGASMMGNDNFGSGNPNA
DRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPMPRVPLSPFPGGPPSQPYAIPTRGPVGV
VPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPNLNFPLDSPNSQPSPVGPLSQ
PGYGNQAFRDGFSMGGISQDFLSDDVKSQGSHGPYDMADFSTQASQGGYPVDYATQGAHG
AFPGNFMNQNSQGGYSRFSGNNDFMSQEYMAHGGQGLFTQAGFIDTSQDDGQQNPFGVNN
PNLQSQGLPNSLYSQPFSHYNTQPLNLSGPQQSQPNQTSQNPKHPYNG
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagagcgatctctttgacaccgtatcgcagcctgacacggtggccgac
gcgtacaactttttggaattcgatactcaaggtgattcggagtttgattacccggagttt
ggatcaccgacggcatggcctaccccgtctgattctatttccatcgctgacgcttccgat
cgtggtggaggaggagctgccgcggatcatcattccgaggcttcgtctccttcttccctc
tctgccggtgccggtaatggtgcaaaagcgggacgtggtggtgttagtagtagtagtcag
gttgatgcattggccgctggtatcggaaatttgaacttcgaggagactggagatgatgat
ggtttcgattatggtcagaatgatttcacggagcacgcttgtaagtattgtggtatctcg
aaccctgcttgtgtggttaggtgtaatgtggcttcctgtagaaagtggttctgcaattca
agggggaacacctcgggctcgcatattgtgaatcatctggttcgagctaaacacaaggaa
gtttgtctccatagagacagtccactaggggaaacaattcttgaatgctacaactgtggg
tgtcgaaatgtctttctcctcggtttcatctcagcaaagacagacagtgtcgtcgtcctt
ctctgtagagatccttgtttaaatgttaatgccctcaaggatatgaactgggacctaagt
cagtggtgtcccttgattgacgataggtgtttcctcccctggcttgttaaggtcccatca
gagcaggaacagctgcgggcacgccaaattagcgcacagcaaataaacaagatagaggaa
ttatggaagacaaatccggatgctactcttgaagaccttgaaaaacctggtgtagacgat
gaacctcagcctgttcaacctaagtatgaagatgcatatcagtatcaaaatgtgtttgca
cctctaatcaagcttgaagcagactatgacaagatgatgaaagagtctcaaagcaaggaa
aacctcacagttcggtgggatattggtcttaacaagaagcgtgttgcatacttcgtcttc
ccgaaggaggaaaatgaattacggttggtgccgggtgatgaactacgtctgcgctactca
ggagatgctgctcatccagcctggcaatcagttggacatgtgatcaagctaacggcacaa
gaggaggttgctcttgaactccgagctaatcagggagttccgattgacgtgaaccatgga
ttcagtgttgattttgtttggaaaagtacaagctttgatcgaatgcagggagcaatgaag
aactttgcggtagatgaaacaagtgtgagtggttatatttaccatcagttgctcggacat
gaagttgaggcgcagatggttcgtaacacactacctagacgttttggggtacctggtctt
ccagaactgaatgcatctcaggttaatgcggcaaaaagtgtccttcagaagcccatcagc
ttgatccaaggtccacctggcacgggtaaaactgtgacttctgcagcaattgtgtatcac
atggcaaaacagggccagggacaggttctcgtttgtgccccaagtaatgttgctgtagac
caactagctggaaaaattagtgctactggtttaaaggttgttcgcctttgtgcaaaatca
agggaagctgtaagttctcctgtagagcatttaacccttcactaccaggtacgacatttg
gacacatctgagaagagcgagctgcataagctacagcagttgaaagatgaacaaggtgag
ctgtcgagcagtgatgaaaagaaatacaaaaacttgaaaagagcaacagaacgtgagata
acccagagtgctgacgtcatatgctgcacgtgtgttggtgctgctgatcttcggttgtca
aactttagatttaaacaggtacttattgatgagtctactcaagcaacagaacctgagtgc
cttattcctttggtccttggtgtaaaacaggttgttcttgttggtgatcattgtcagctt
ggccccgtcattatgtgcaagaaagcagctcgtgctggcttggcacagtctctctttgaa
cgacttgtgcttcttggtatcaaacctatcagattgcaggttcaatatcgtatgcatcca
gctttgtccgagttcccatctaacagcttctatgaaggaactctacagaatggagtcaca
attattgagaggcaaacaacagggattgatttcccatggcctatgcctaaccggcccatg
tttttctatgttcagctgggacaagaggagatcagtgctagtggtacatcgtatcttaat
agaactgaggctgctaatgtggagaaacttgtgactgctttcttaaagagtggagttgtc
cccagtcagattggtgtgataactccatatgagggacaaagggcatacattgttaattac
atggcaagaaatggttctctccgacagcaactttacaaggaaattgaggttgccagtgtt
gattcttttcaaggaagggaaaaagattacatcatattgtcctgtgtgagaagtaacgag
catcagggcattggattccttaatgatccacggaggctcaacgttgcacttacgcgtgct
cgttatggaatagttattcttggaaacccgaaggttcttagtaaacagcctctgtggaat
ggattgttgacacattacaaggaacatgagtgtttggtcgaaggacctcttaataattta
aagcagagcatggtacagtttcagaaaccaagaaagatttacaatgatcggaggctattt
tatggtggtggcgctagcatgatgggaaatgataattttggttcgggtaatcctaatgct
gacagaagaggcagtcgaggaagggctggtggttcctatcttccttctggcccacctaat
ggtgctagacctggactacacccagctggctacccgatgcctagggttccactttcaccc
tttcccggtggtcctccttctcagccatacgctattccaactcgtggacctgtgggtgtt
gttcctcatgctcctcaacctggaaatcatggttttggagctggtcgtgggacttcagtt
ggaggccatcttccgcaccaacaagctacccaacataatgttggaactattggccctaat
ctaaacttcccgcttgatagtccaaatagccagccttcacctgttggtccgctatcccaa
cctggatatggtaaccaagcattcagggatggattttctatgggtggcatatcacaggat
ttcttgagtgatgatgttaagagccagggatctcatggtccttacgacatggctgacttt
tctacacaggcctcacaaggtggatatcctgttgattacgccacacaaggagcacatggt
gcgtttcctggaaacttcatgaaccagaattctcaaggtggctattctcgtttcagcgga
aataatgatttcatgtctcaggagtacatggcacatggaggtcaaggtcttttcacccaa
gctggctttatcgacacatcccaggatgatggacaacagaatccttttggtgtgaacaat
cctaatctccagtctcagggtctcccaaattcgctttactcgcagcctttctcacactac
aacacacagccactaaacctttcaggcccacagcaatctcaacctaaccagacgtcacaa
aacccaaaacatccttacaatggctga
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