Camelina sativa (false flax): 104786766
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Entry
104786766 CDS
T05044
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104786766
03015 mRNA surveillance pathway
104786766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104786766
03041 Spliceosome [BR:
csat03041
]
104786766
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104786766
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
104786766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
104786766
NCBI-ProteinID:
XP_019101448
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Position
5:complement(13144171..13148912)
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AA seq
827 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDVTKVKMDVMKPWIATRVTELL
GFEDEVLINFIYGLLDGKVVNGKEIQISLTGFMEKNTGKFMKELWTLLLSAQNNSSGVPQ
QFLDAREADTKKKLEAAMQKANHEHDSLRKIDSSVELKGKNGMEKKPSRDLPEDGRRADE
KNGVKETRRDLISPRRREASRSPLRGSRSRSISKTNSGSRSYSGERKSRSLSRSSDASIS
PRKRRLSNSRRRSRSRSLRRSLSPRRRRIHSAYGSRSRSPIRRHRRSTPERRRQSPPPSR
RRRSPSPFRRRRSPSPPARRRRSPSPPARRRRSPSPPARSRRSPSPPARSRRSPSPPGRH
RRSPLPFRRRRSPSPPARRHRSPSPLYRRNRSRSPLAKRGRSDSQGRSPSPVARRMTPTG
ARLPTPPAGQKLPSPPPRRAGLPSPMRIVGSHAANHLESPSPPVRRRSSLTPAKERGSLS
PAGRGEGESPSHVKHSGSMSPVRSRGRSSPSSHVKARSPVRRRSPTPVDRRSRRFPSADR
RRRRSPSSSRSPSRSFSPPVRRRSPSPSRRRQQRDRRSPGHPSEEQDREDGIQSSKLLKR
TAVQLPDIDKRKQLPEKVPEVRRAEHVKEQERKSSDKIPERRSSRTHGSEMPPLSPEESL
RVENSEGKSQPVSNKVKGSDQVEKEDNSDLDANLSSDSKENIRHHTKDRKRRKEKRSSRE
EVSSDDKGSSDSDLEDRKEAKRRRKEEKKTRKEEKKRKREERRRKREERRGGKLKHKNQE
HSDTSEGDEAETHPKNKKGESDPKRLEIELRNKALESLKAKKAKLDK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgggtttttccggggtacctccgccgagcaggatactcggttctctaacaag
caagccaaattgatgaagagtcagaaatttgctccggagttggagaatctggtggatgtg
accaaagtgaagatggatgttatgaagccttggattgcgactagagtcactgagcttctt
ggttttgaagatgaagttctcatcaactttatttatggtctgcttgatgggaaggtagtg
aacggtaaggagattcagatatcgctaactggattcatggagaaaaatactggcaagttt
atgaaagaactctggacgcttcttctaagcgcacagaataattcaagtggtgttccacag
cagtttttagatgctagagaagctgacacaaagaagaaactggaagcagcaatgcaaaaa
gcaaaccacgagcatgattcattgaggaaaatagacagcagcgttgagctcaaggggaaa
aatgggatggagaaaaaaccttcaagagatcttccagaggatgggagaagggctgacgag
aagaatggtgtaaaagaaacgagaagggatctgatatctccacgtcgcagagaagcatcc
cgctcaccccttagagggtcacgttctaggtctatcagcaaaacaaattcaggctctaga
agttattctggtgaacggaaatccaggagcttatcacgatcatcagatgcctccatctca
cccagaaagcggagattgtcgaattcaaggcgtagatccagatcacgttccttgcgtagg
tctctttctcctcggcgacgtaggatacattctgcttatggaagcaggtctcggtcacca
attagacgtcacaggcgatctacgcctgagagacgccgtcagtcaccacccccttcaagg
cgtcgccggtctccatcaccctttaggcggcgcaggtcaccatctccgcctgcaaggaga
cgcaggtcaccatctccgcctgcaaggagacgcagatcaccatcaccacctgctaggtca
cgcaggtcaccttcaccacctgctaggtcacgcaggtcaccgtcaccgcctggtagacat
cggcgatctcctctgccctttagaaggcgtaggtctccttcaccaccagctagaaggcac
aggtctccgtctccactctataggcgcaacaggtctcggtcaccactggctaagcgagga
aggtctgactcacaggggaggtctccctcaccggtggctaggcgcatgacacctactggg
gcaagattgcctacaccacctgctgggcaaaagttgccttcaccacctcctaggcgtgca
ggattaccttcgccgatgaggattgtaggatctcatgcagccaaccacctggaatcacca
tcaccacctgttagacgacgtagttcactgactcctgccaaagagcgaggctccttgtcc
ccagctggacgcggtgaaggagaatccccttcacatgtcaagcatagtggatctatgtca
cctgttagaagtcgaggtagatcttctccttcatctcatgtcaaagcacgctctcctgtt
cggcgcaggtcaccaacacctgtcgaccggcgtagtcgaagatttccatctgctgacaga
cgtaggagacggtctccatcctcgagtagatctccttctaggtcgttctcacctcctgtt
cgccgtagatctccttctccaagtagaagaaggcaacagagggacagaagatctcctgga
catccatctgaagagcaagatagagaggacgggattcaaagttccaagctattaaagaga
actgcagtgcagttgcctgatattgataagaggaaacaattaccggaaaaggtgccagaa
gttaggcgtgcagaacatgtgaaggagcaagagagaaagagcagtgataagataccagag
aggcgttccagtagaacccatggttcagagatgcccccactttcacctgaggaatcgctt
agagtagaaaattcagaaggaaagagtcagcctgtttctaataaggtgaagggcagtgat
caggttgagaaagaggataacagcgacttggatgcaaacctgtcctctgattctaaggaa
aatatcagacatcatactaaggacagaaagagaagaaaggagaaaaggtcttcaagggaa
gaagtatcctcagatgataagggcagttctgattctgacctggaagataggaaggaggct
aaaaggaggaggaaggaagaaaagaaaacgagaaaggaggagaagaaacgcaagcgagag
gagagacgtcgtaaaagggaagaacgtcgtggtgggaagctgaaacataagaatcaagag
cattctgatacttcagagggcgatgaagctgagacccatcctaagaacaaaaaaggggag
tcagatccaaagaggcttgagattgagttgcgaaacaaagcactcgagtcactgaaagca
aagaaggcaaaattggacaagtga
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