Camelina sativa (false flax): 104787571
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Entry
104787571 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 1-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104787571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104787571
03019 Messenger RNA biogenesis [BR:
csat03019
]
104787571
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104787571
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104787571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
104787571
NCBI-ProteinID:
XP_010511479
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Position
5:complement(25546581..25548110)
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AA seq
419 aa
AA seq
DB search
MATTGSFPNHRNAQFRNANAGATLKRGFNDNRGYGGGIRDYQEERNRYAPPQKRFRSQPQ
PQPQPQFRSEKIPLYHHPHGSSNNNMSRVSSQSYNNYGVDVIASNSSFPLRNNVSNTNNY
QKPFVGFGNNPNPQIVPVPLPYRKLNDDVALDSLPEWVPNHQPVSRTLTPNYPVPSTNFV
PNTSVQAPVFTNYSNMASVVSQSMPQPIVFSKELIALLSVLNNEKEKPTSEASKPGELPL
GLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGVRFKCQEEHSKHMDWHVRKNRTAKPVG
RQGQQTKKSRGWLASASLWLSAATGGGMEQAAKPSFGGETQKKEEEQKQLVVPADENQKN
CALCEEPFEEFFSHEDDDWMYKDAVYLNKKGRIVHAKCMPETRKDSRELPISVPSVAVQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaccggatccttccctaatcacagaaacgcacaattccgaaacgcaaacgct
ggagcgacgctgaagagaggattcaacgataatcgcggttacggaggcggaatcagagat
tatcaagaggagcggaaccgttacgcgccgcctcagaaacgtttcagatcgcaaccgcaa
ccacaaccacaaccacaattccgatctgagaagattcctctgtatcatcatcctcatggt
agtagtaataataacatgtctagggtttcttctcaatcatataacaattacggtgttgat
gtgattgcttctaattcaagttttccattgcgtaacaatgtttctaacaccaacaattat
cagaaaccctttgttggttttggtaataaccctaacccccaaattgttccggttccatta
ccgtatcgtaagcttaacgatgatgtcgctttagattcgttgcccgaatgggttccgaat
catcaacctgtctcaagaaccctaactccaaattatcctgttccaagtacgaattttgtg
ccaaacacgagtgttcaagcacctgtttttacgaattattctaacatggcttcagttgtg
tcacaatctatgcctcaaccaattgtttttagcaaagaattgattgcgttgcttagcgtt
cttaacaatgagaaagagaagccaacttcagaagcaagtaaacccggtgaattgcctctt
gggttaagctttgataacccatcatcactcaatgtgcgacacgaatctgtgattaagtct
ttgtattctgatatgccgaggcaatgttcatcgtgcggggttagattcaagtgccaagaa
gagcatagtaagcatatggattggcatgtgaggaagaacaggacggctaaacccgttggg
agacagggtcaacaaacgaagaagtcgcggggttggttagcgagtgcttccttgtggctc
agtgcagcaactggaggtggcatggaacaagcggcgaaaccatcttttggaggagaaacg
cagaagaaggaggaagagcagaaacaactcgtagtgcctgcggatgaaaaccagaagaat
tgtgcgttgtgtgaagagccgtttgaagagttctttagccatgaagatgatgattggatg
tacaaagacgcagtctacttaaacaagaagggtcgcatagttcatgcaaagtgtatgcct
gaaacccgaaaggattcgcgagagttgccgatttcagttccatcggttgcggtgcaatag
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