Cannabis sativa (hemp): 115705095
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Entry
115705095 CDS
T08987
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115705095
09122 Translation
03013 Nucleocytoplasmic transport
115705095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115705095
03041 Spliceosome [BR:
csav03041
]
115705095
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115705095
Spliceosome [BR:
csav03041
]
Complex C
Other components
EJC/TREX
115705095
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115705095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
115705095
NCBI-ProteinID:
XP_030488194
LinkDB
All DBs
Position
1:27157587..27166333
Genome browser
AA seq
611 aa
AA seq
DB search
MEIFRRAILQPGPPETFALQTVQQVIKPQKQTKLAQDENQLLENILRTLLQELVSCAVQS
GEPIMQYGQSIDEGESSLGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMRNCKD
IFGYIESKQDILGKVELFARGKLVMLRTCNQLLRRLSKATDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDPPDGISIDFNFYKTFWSLQEHFCNPASISLVPIKWQKFL
SNLLVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLTSSKLMGLELKDPSFRRHILVQC
LVLFNYLKAPGKSEKDLPSESMKEEIKSYEEHVKKLLEMTPPKGKDFLHKVEHILEREKN
WVWWKRDGCPPFEKQPIEKKVVQDGAKKRRPRWRLGNKELSQLWKWSDQNPNALTDPQRV
QTPSIAEYWKPLAEDMDPAAGIEAEYHHKNNRIWVCGCILWKGLRFSARQDLEGFSKFTD
HGVEGVVPVELLPPDFRSKYQSKPNDRAKRAKKEEAKGSAQQGEENQISTPASENDEGIR
GDLETSTTPMDAEPETAGVTDMVSQGGSPMPDENQKQNSTRDAGREMGQLEADSEAEAGI
IEGEVDLDAAS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggaaatttttaggagggccatactgcaacctgggccacccgaaacttttgctttacaa
acagttcaacaagtcattaaacctcagaaacaaacaaagttagcgcaagatgagaatcag
ttattagaaaatattctccgaactttgcttcaggaactggtgtcatgtgcagtacagtca
ggggagccaataatgcaatatgggcaatcgatagatgagggggagagttccctgggccat
attccgcgtcttcttgacattgtattatacctttgtgaaaaggagcacattgaaggcggc
atgattttccagctcttagaagatttaactgaaatgtctacaatgaggaactgcaaagat
atctttggatatatagagagtaaacaggatatattagggaaggttgagctttttgctcgt
ggtaaacttgtgatgttgaggacatgcaatcaacttcttcgtcgtctttcgaaggcaacc
gacgtggtcttctgtggacgaattctaatgttcctggcacatttttttccactatctgag
cgttcagctgtaaatataaaaggagtttttaacacatcaaatgaaacaaaatatgagaag
gacccccctgatggcatttccattgatttcaacttttataagaccttttggagtttacag
gaacacttttgcaatcctgcttccataagtctcgttcctatcaagtggcagaaattcttg
tccaatttattggttgtgctgaatacatttgaagctcaacctttaagtgatgaagaggga
aatgccaataatttggaggaggaagcagcaacttttagtataaagtatcttactagcagt
aaattaatgggtttggagttaaaggacccaagttttcggcgacatattcttgtccagtgc
cttgtactattcaactatcttaaggccccaggtaaaagtgaaaaagatttgccctctgag
agtatgaaagaggaaataaaatcatacgaggagcatgttaaaaagctgcttgagatgact
ccaccaaagggtaaagattttcttcataaagttgagcatatactcgaacgtgaaaagaat
tgggtgtggtggaagcgtgatggctgtcctccatttgaaaaacaacctatagagaagaaa
gttgtccaagatggagctaagaaacgtaggccaaggtggagacttggaaataaagaactt
tctcaattatggaaatggtcagatcagaatccgaatgctttaacggatcctcaacgtgtt
cagactccttccatagcagaatactggaaaccattggctgaagatatggatcctgctgct
gggatagaagctgagtatcaccataaaaacaacaggatctgggtatgcgggtgtattctt
tggaaaggtctacggttttcagctagacaggacttggagggattttctaagtttactgac
catggcgttgagggagtagtgcctgtagaacttttaccacccgattttcgttccaaatac
cagtctaaaccaaatgacagggctaaacgtgctaaaaaggaagaagcaaaaggttctgca
cagcaaggggaagaaaatcagatctcaactcctgcgagtgaaaatgatgaaggaatcaga
ggtgatctcgagacctctacaaccccaatggatgctgaacctgaaaccgctggtgtgact
gacatggtgtcccaaggtggcagtccaatgccggacgaaaaccagaagcaaaactcgaca
cgagatgctggtcgagagatgggccaattggaagcagattctgaggcagaggcggggatc
attgagggtgaggttgatttagatgcagcttcctga
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