Cannabis sativa (hemp): 115705730
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Entry
115705730 CDS
T08987
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115705730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115705730
03019 Messenger RNA biogenesis [BR:
csav03019
]
115705730
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115705730
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115705730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
zf-C2H2_2
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
115705730
NCBI-ProteinID:
XP_030489006
LinkDB
All DBs
Position
1:complement(75436648..75443216)
Genome browser
AA seq
942 aa
AA seq
DB search
MDAEKLALSEANPSLIAFPPEQPRALININGFCSGTKAMPNELSQKSPPSVVDKFKALLK
QRDDDLRVSAEDEVSLPRTEEIVQLYELVLAELSFNSKPIITDLTIVAGDQKEHSKGIAD
AICARILEVPVDQKLPSLYLLDSIVKNIGGGYVQYFSARLPEVFCEAYRQVHPSQHPAMR
HLFGTWSSVFPPAVLNKIEEQLQFSPSVNQQSSRMPPLRASESPRPTHGIHVNPKYLRQV
EHSAAESHMQQAGRASALNIYAQKPGIGTIGRDDELGKWQRKPYHNQNQFETSAAYKVSN
GREHQGPRALIDAYGSDDRKSTLSDRPLQVERIDANGLEHRASLMSWQHTEEEEFDWEDM
TPNLAADRGRAGEFLPSLRSFKARPNFLAPRTTHVESDTRNSWSSQAQLPAADDSSIAME
DAVPPLGFGRGLPGNISRFQDETNHSLVSRYPQEHWNMAHLSQTSHHHSRGRGRNFQMPI
LPGGDNKSPFIDKLPDVSTQQLHGSLNVVSRMGSSTIESFNGESRSVVPSSLGPRPVHVH
NSNVPMHPGLPLRNQKVPYDFTNSSNTQNNQRPNKTSYGFDNKEQSLTKLPQFSYQNVSI
AHANQHNQMQNPLQPQLLPTQDGRDNFLNSTGAPLPPHLVNPNLDRGYSARGYGVPTSTN
MSNPVPLGQLSLPSNNVMNGSLHLQGGGVPPLPSGPPPTSLQAVLPSHNAGLPVPGQPPG
SAFSGLIGSLMAQGLISLTKPTPVQEPVGLEFNVDLLKVRHESAINALYTDLQRQCTTCG
LRFKSQEEHRSHMDWHVTKNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLPTE
TVVEKKSDEEMAVPADEDQNTCALCGEAFEEFYSDETEEWMYKGAVYLNAVDVSTTGTDT
SHLGPIVHAKCRSESSTVPPENFGQDEGGTIEEGSQRKRMRI
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggaaaagctcgcactgagcgaagcaaaccctagtttgattgctttcccgccc
gagcagccgcgggcgttgattaacatcaacggtttctgttccggtaccaaggcaatgccc
aatgagctttctcagaagtctccgccttccgttgtcgacaagtttaaagcgctgttgaag
caacgggacgacgacttgagggtttcggcggaggacgaggtttcgttgccacgaacggag
gaaattgttcagctttatgagttggtcttagcggaactatcattcaattccaagcccatc
attacggatcttactatcgtcgccggcgaccaaaaagagcacagcaagggcatcgctgat
gcaatttgtgctcgcattcttgaggttcccgttgaccaaaaacttccttcattgtatctt
ttggacagtatagttaagaatataggtggtggttatgtccagtatttctctgcccgtcta
cctgaggtcttctgtgaggcataccgacaagttcacccttctcagcatcctgctatgcgt
cacctctttggcacttggtcatcagtatttccaccagctgtcctaaacaagattgaggaa
caactgcaattttctccatctgttaaccaacaatcatcgagaatgcctccactgagagct
tcagaatctcctcgaccaactcatggaatccatgtaaatccaaagtatttgcgtcaggtg
gaacattcagctgcagaaagtcacatgcagcaggcaggcagggcttcagctctgaacata
tatgctcaaaaacctggcataggaacaattggtagagatgatgagcttggtaaatggcaa
cgaaaaccgtatcataatcagaatcagtttgaaacttctgcagcatacaaagtcagtaat
ggacgtgagcatcaaggaccaagggccttaattgatgcatatggaagtgatgacagaaaa
tcaactttaagtgataggcctttgcaggttgagcgtattgacgcaaatggtttggagcat
agggcttctttaatgtcatggcagcataccgaagaggaagagttcgactgggaagatatg
actccaaatttagcagcagaccgtggtagggctggagaattcttgccatctttgagaagt
tttaaagcaaggccaaattttttagcaccaagaactacccatgtggagtctgatactcgg
aatagttggtcaagtcaggcgcagctacctgcagcggatgattcctctattgctatggaa
gatgcagtccctccccttggttttggccgtgggttgccgggtaacatatctcgattccaa
gatgagacaaatcatagtctagtttctcgttatcctcaagaacactggaatatggctcac
ctctctcagacttcacaccaccattccagaggaagaggccgaaacttccaaatgcccata
cttccaggtggcgataacaagtctcctttcattgacaagctcccagatgtcagtacacaa
caacttcatgggtccttaaatgtagtttcaagaatgggttcttccacgatagaatccttt
aatggtgaatctcgatcagttgttccatcatcactggggccaaggccagtacacgtgcat
aattcgaatgtgccaatgcatcctggtttgccattgcgaaaccagaaggttccctatgac
tttacgaattcaagcaatacccaaaacaatcaacgcccaaataagacttcatatggtttt
gacaacaaggagcaaagtttaacaaagctgccgcaattttcttatcagaatgtttctata
gctcatgcaaaccagcacaaccagatgcaaaatcccttacaaccacaacttcttccaaca
caggatggccgtgataatttccttaactctacaggtgctcctttgccacctcatttggtg
aatccaaacttggatcgtggatacagtgcacgaggatatggtgtccctactagtactaat
atgtcaaaccctgtccctcttggacaattgagcttaccatccaacaatgttatgaatggc
tccttgcacttacagggtggaggcgtaccacctttgccatcaggacctcctcctacttca
ttgcaagcagttctgccttctcacaatgctggtctgcctgtccctggccaaccaccaggg
agtgcattctctggtttgattggttctctaatggcacaaggtttaatctcattgaccaaa
cctactcctgtacaggaacctgtgggactcgagtttaatgtagaccttcttaaggtgcgt
catgaatctgcaataaatgctctctatactgatctgcaaagacaatgcacaacttgtggc
ctccgatttaagagccaagaagagcaccgcagtcatatggattggcatgtgacaaagaat
cgaatgtcgaagaaccgcaaacagaagccctctcgtaagtggtttgtaagtgcaagtatg
tggctgagtggtgcagaggcactgggcacggatgcagttcctgggtttttgcccactgag
actgtagtggaaaagaagagtgatgaagaaatggcagttcctgctgatgaggatcagaat
acttgtgccctatgtggagaagcttttgaagagttctatagtgacgaaactgaggaatgg
atgtacaagggcgctgtctatttaaatgcagtagatgtgtcaacaacaggcacggatacg
tctcacttaggtcctatagtgcatgcaaaatgcagatcagagtcgagtaccgttccccct
gaaaattttggacaagatgaagggggaactattgaagagggtagtcaaagaaaacgaatg
aggatttag
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