Cannabis sativa (hemp): 115711551
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Entry
115711551 CDS
T08987
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115711551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115711551
03019 Messenger RNA biogenesis [BR:
csav03019
]
115711551
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115711551
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115711551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
115711551
NCBI-ProteinID:
XP_030495762
LinkDB
All DBs
Position
3:73281510..73288511
Genome browser
AA seq
1078 aa
AA seq
DB search
MEMESSRRPFDRSREPGLKKPRLNEEPERGGLSSNPNTRSFPQRPTGNNPLVSSRSSSGG
GGYQPQPLSQHQQQQQQHQELVSQYKTAIAELTFNSKPIITNLTIIAGENLHAAKAIAGT
VCHNILEVPSDQKLPSLYLLDSIVKNIGRDYIKNFAARLPEVFIKAYRQVDPPVHTSMRH
LFGTWKGVFPSHTLQMIEKELGFVPAANGSSTANTTSRPDSQSNRPLHNSIHVNPKYLEG
QRLQQLNRAKGLATDVSGSIANSVEDVENMDRATNINTGRAWADPSSKLNRSQRGTSSEG
IHEKSTAGEYADYDYSSDFPRNSGFGIGRGGVRVSESEHDKLWHGDGGNFAESVSGQRNS
FSIKHGFPNYPAPKSTNVVNTSLQSAQNVTSRSSGGVSSSSWKNSEEEEFMWDGMNSRSS
DHGASVISSKLRKDRSASDDSDKSGFEDHVKPQSLHDYTPRGDKEASVDSLSVEHKDLPG
LGHRISSPWLLQEPQLTDGLPRPVNSSIGFTTNAVLGSSGALTQQRFQSLKSGQSSLRQR
PPSPTLTARHPLLSSQNSTDHERVKAHSLSHAESKVFSGQLNLGVPNIHTQDSLPISSSH
VRQGKMAKSLPHDVQASSPSVPTFPLRHASFSQQAEDSTESDPLGLIQKTSLPQVSVSGI
LSTNSRSASEHSPLTVETLGDSSTASLLAAVMKSGILSKSSITNSSLPNLNFPDSGQLPS
QSSQPPLPSGRTPTQVMNSGSRATSTSSSGHSSYDGLSASSKIPKKKVEQPSNQPARPLS
SSPAGGASENVSNVAKKVSDPISNLLSSLVAKGLISASKTELPAVIPPEVPPQTQKKSRT
ITSTGSVPLSSVSASPVFSIKNDGSSLSKPDSSVANPQSTKPEKPQSTNLEIKNLLGFEF
KQDKIREFHSSVVSELLDGFEHQCAICSLKLKHPDQLKRHLEWHDLKKANDSTKASRNWY
SNSRDWVAGVGCPSGFELAKSVDKPVMMIDKDEPMVPADESQCVCVLCGEIFEDFYCEET
DEWMFKGALHMIIPSGTGELASNDKNVSKGPIVHKNCVSESSLPDLGLVSNIKMEQDV
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaaagctctcgaagacctttcgatagatcaagagagccaggtcttaagaaa
ccccgattgaatgaagaaccagagcgaggaggtctcagttcgaatccaaacacccggtct
tttccgcaaagaccaactgggaacaaccctttggtttcaagtcgcagcagcagcggcggc
ggagggtatcagccgcagcctttgtcgcagcatcagcagcagcaacagcaacatcaggag
cttgtgagccagtacaagactgcgattgcagagctgactttcaattcaaagcccataatt
accaatctgactataatcgcgggagagaatctccatgctgccaaggcaattgctgggact
gtatgccacaacattctcgaggtcccgagtgatcaaaagctaccatcgctttatctttta
gacagtatcgtaaagaatattgggagggactacataaaaaactttgctgcgagattacct
gaggtattcatcaaggcatacaggcaggttgatcctcctgtacatacgagcatgcgacat
ctttttggaacatggaaaggagttttcccttctcacacacttcagatgattgagaaagaa
cttggttttgttcctgcagcaaatggttcgtctacagctaatacaacatctaggcctgat
tcacaatcaaatcgtccactgcataatagtattcatgtcaatcccaaatacttggaaggg
cagcgtcttcagcagcttaatagggcaaaaggactggctactgatgtatctgggtctatt
gcaaactcagttgaggatgtagagaacatggacagagcaacaaatatcaatactggacga
gcatgggctgatccgtcttctaaattgaaccgttcacaaagaggtacatccagtgagggt
attcatgagaagagtactgctggagagtatgcagactatgactacagctctgattttcca
aggaattcaggcttcgggattggaagaggtggtgtgagagtttctgagtcagaacatgat
aaactttggcatggagatggtggcaactttgctgaatcagtatctggtcaaagaaatagt
ttcagtattaagcatggatttccaaattatccagctcctaaatctacaaatgttgtcaac
actagtcttcagtcagcacaaaacgttacaagtagaagcagtggtggggtgtctagcagc
agctggaaaaattctgaggaagaagaattcatgtgggatggtatgaactctagatcgtca
gaccacggtgcatcggtcatatctagtaaattgagaaaagatcgttcagcttctgatgat
tcagacaaatctgggtttgaagatcacgttaaaccacaaagtttacatgattatacacca
aggggtgataaagaggcttctgttgattcactttctgttgaacataaagatctacctggt
cttgggcatcggatatcatctccgtggttgttgcaggaaccccagttgactgatgggttg
ccccgtcctgtaaattcaagcattggcttcacaacaaatgctgttttagggtcttctggg
gcacttacacaacaacggtttcaatctttaaagtctgggcagtcatcattgagacaacgg
ccaccctcacctacattaactgcacgccatcctcttctttcatcgcaaaattcaacagat
catgaacgtgtgaaggcacattctcttagtcatgctgagtctaaagtattttcagggcag
ttgaatctgggggtgcctaacatacatactcaggattcattgcccatctcatcctcccat
gttcgacagggaaaaatggcaaaatcactgccccatgatgtacaagcttcttctccttca
gttcccacttttccgctgaggcatgcttccttttcacaacaagcagaagattctacagag
tctgatcctttaggtctaattcagaaaacttctctacctcaggtttctgtttcagggatt
ctgtcaacaaacagtaggtctgcatcagagcactctcctcttactgtagaaactttagga
gactcaagcacagctagtctactggctgctgttatgaaatctggaattctttctaagagt
tcaattaccaatagtagtctacctaacctgaactttccagactcagggcagttgccatca
cagtcaagtcagcctcctcttcccagtggacgtactcctactcaggtcatgaactcaggg
tctagggctacatcgacatcttcatcaggtcattcctcctatgatggcttgtcagcatcc
tctaagatacctaaaaagaaggtagagcagccgtcaaatcaacctgctcgaccactatct
tcgtctcctgcaggtggtgcatcagaaaatgtttcgaatgttgcaaagaaagtctctgat
ccaatatctaacctccttagctcgttagttgctaagggtttgatatctgcatcaaagaca
gaattgcctgctgtgattccacctgaagttcctcctcaaactcaaaagaagagccggacc
attactagcacaggctctgtcccattgtcctcagtttcagcttcccctgttttttcaatc
aagaacgatggctcatctctctcaaaacctgattccagtgttgccaatcctcagtccaca
aaaccggagaaaccccaatcaaccaacttggagattaagaatcttctaggctttgagttt
aagcaagacaagatccgggaatttcattcatccgttgtcagtgaactccttgatggcttt
gaacaccagtgtgctatatgcagtctaaaacttaaacacccagatcaattgaagagacac
ttggagtggcacgatttgaaaaaagctaatgattccaccaaggcatcaagaaattggtat
tctaattcaagggactgggttgctggagtaggatgtccatcgggatttgagcttgcaaaa
tcagtagacaagcctgttatgatgattgataaggacgagccaatggttcctgcagatgag
agtcaatgtgtatgtgttctatgtggtgagatttttgaagatttctattgtgaagaaaca
gatgaatggatgttcaagggtgcattgcacatgatcattccttctgggactggtgagtta
gcaagtaacgacaagaatgtgagcaagggccccattgtacacaaaaattgtgtatcagag
agttcactccctgatttgggtctggtcagcaatatcaaaatggaacaggatgtatag
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