Cannabis sativa (hemp): 115719699
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Entry
115719699 CDS
T08987
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
csav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115719699
09124 Replication and repair
03420 Nucleotide excision repair
115719699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115719699
03400 DNA repair and recombination proteins [BR:
csav03400
]
115719699
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115719699
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115719699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
115719699
NCBI-ProteinID:
XP_030504704
LinkDB
All DBs
Position
2:complement(92499452..92502977)
Genome browser
AA seq
420 aa
AA seq
DB search
MNNGEGRRLNGEADDDDDEDDGNGLGRDAWERTYDDERSWESLQEDESGLLRPIDNKSLY
HSQYRRRLRTASAVRIQKGLIRYLFLVIDLSKAATEMDFRPSRRAVVVKHVEAFIREFFD
QNPLSQIGLVTIKDGVANCLTDLGGSPESHVKALMGKLDCSGDSSIQNALDLVHGYLNQV
PSYGHREVLVLYSALSTCDPGDIMETIQTCKKSKIRCSVIGLSAEIFICKYLCQETGGSY
SVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKAGGGY
TCPRCKARICDLPTECRTCGLTLISSPHLARSYHHLFPIVPFDEVSPSLLNDPYLKLPRS
CFGCQETLQNAGNKPGPRVSCPKCKQHFCLDCDIYIHESLHNCPGCESARHSKPVAATEE
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggagagggaagaagattgaatggagaagcagacgacgatgatgatgaagac
gacggaaatggccttggccgtgacgcctgggagagaacctacgacgatgagaggtcatgg
gaatcgcttcaagaggatgagtctggtctccttcgtcccatcgataataaatccctttac
cattcccagtaccgccgccgccttcgtacggcctctgctgttcgaatccagaagggactc
attcgttacctttttcttgttattgatctctctaaggcagctacagaaatggattttcga
ccgagtcgaagggctgtagtagtaaaacatgttgaggcattcattagagagttttttgat
caaaatcctcttagtcaaattggtctagtgaccattaaagatggggtagctaattgctta
acagatcttggtggcagtcctgagtctcatgtgaaggctttgatgggaaaacttgattgc
tcaggagattcatcgatacagaatgcactggaccttgttcacgggtatctgaatcaagtt
ccctcatatggtcatcgagaagtgcttgtcttatattcagcattaagtacatgtgatcca
ggagatataatggagaccattcagacatgtaagaaatctaaaataaggtgttcagttatt
ggtctttctgcagaaatttttatatgcaaatatctctgccaagaaactggtggttcttac
tcggttgcattggatgagtcacatttcaaagaattaatactggagcatgcacctccacct
cctgccatagcagaatttgcaattgctaatttaatcaaaatgggcttcccacaaagagcg
gcagagagctccattgccatatgttcttgtcacaaggaagcaaaggctggaggcggatac
acttgtcctagatgcaaagcgcgcatatgtgatttacctacagagtgtcgaacgtgtgga
ttgacgctcatttcttctccccatttggcaagatcttatcatcatctctttcctattgta
ccgtttgatgaggtttctccatcactactaaatgatccatatctaaaattaccaagatca
tgctttggctgccaagagactctccaaaatgctggaaataaacccggtcctcgtgtttct
tgcccgaaatgcaagcagcatttctgccttgactgcgacatttacattcacgagagctta
cacaactgcccaggttgtgagagtgcaaggcattctaaaccagttgctgcaacagaagaa
taa
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