Cannabis sativa (hemp): 115724500
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Entry
115724500 CDS
T08987
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115724500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115724500
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115724500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WD40_like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
115724500
NCBI-ProteinID:
XP_030509654
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Position
X:84576127..84587240
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AA seq
726 aa
AA seq
DB search
MMYGDPQQQQQQQQQQHGGGGDFNRGPPNPMMRQPSASSTNLAPPEYHHPSTPGPPMPSY
DAHADGFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTILQPTPAAAIDMLPTG
AYADNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI
LQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKTAHKESVRDLSFCRTDL
KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS
GRELCSFHGHKNVVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELQSFRGHRKDVTTLA
WHPFHEEYFVSGSYDGSMFHWLVGHETPQIEIPSAHDNSVWDLAWHPIGYLLCSGSNDHT
TKFWCRNRPGDTARDNKFNMGQNQGYGEQNPALAGRFPGNFPVSDGPTTPGPFPPGLTRN
EGTIPGVGVAMPLSIPSLDPSAQGDQKHHPISMPLGAPPLPPGPHPSLMAANQQQSYQQN
LQHMPQQQHQQHHQALPQQMPPMPMPPNMQQLQPPSHLPLLPHPHLTRPPPQMPPHGMSS
SIPGSLPMPSSVPSHSMPGPMGMQGTMNQMVPMPQGHYMGMNQMHSGSLPTNGPQQVGGF
PNGMPNMQGPSNASGGPMYPQGGAFNRAQGGQMHMMQGYNPYQSGNQSGMPQSQQGPPPH
GQPPPQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatggcgatcctcagcagcagcagcaacagcaacaacaacaacatggtggtggt
ggagattttaacagggggcctccaaacccaatgatgcgtcagccttctgcttcttctact
aatctcgctcctcctgagtatcaccatccttctacccctggtcctcccatgccttcttat
gacgctcatgctgatggctttgccgcaaaaaggatgagaaaacttacacagaggagggcc
gtggactacactagcactgtcgttcggtatatgcagattcgtatgtggcaacgggattca
agagataggacaatattgcagccaactccagcagcggctatagatatgttgccaacgggg
gcctatgcagacaatccttctactagtttcgctgcaaagtttgtacatacttctctaaac
aaaaatcgttgctccattaaccgcgttctttggactcctacaggaaggcggctgatcact
ggatctcaaagtggggaattcactctttggaatggacagtcatttaattttgaaatgatt
cttcaggcccatgaccaagcaatcagatcaatggtatggagtcacaatgataactggatg
gtctcaggtgatgatggaggcgcaataaaatattggcagaacaacatgaataatgtgaag
gcaaataaaactgctcataaagagtcagttcgggacttaagcttttgtaggacagacttg
aaattctgctcctgttcagatgacactactgtgaaagtgtgggactttgctcggtgtcaa
gaagaacgctcgttaactggccatggttgggatgtgaagagtgttgactggcaccctacg
aagtctttactcgtctcaggtgggaaagacagtctagtcaaactatgggatgctaaatca
gggagggagctctgctcttttcacggtcataaaaatgttgtcctttgtgtcaaatggaac
caaaatggtaactgggtactgactgcttcgaaggatcagattataaagctttatgacata
agggctatgaaggagcttcaatctttccgtggacatcgaaaggatgtgactactttggct
tggcatccgtttcatgaagaatactttgtcagtggaagttacgatggatccatgtttcat
tggcttgtggggcatgaaaccccacagattgaaattcctagtgcacatgataacagtgtg
tgggatcttgcgtggcatcctattggatatcttctttgcagtggcagcaatgatcataca
acaaagttctggtgccgaaatcggccaggagatacagctcgtgataataaatttaatatg
ggtcaaaatcaaggttatggggagcaaaatcctgctcttgctggacgctttcctggtaac
ttcccagtttctgatggtccaacaacacctggaccatttcctccggggttgactagaaat
gagggaaccattccgggtgttggagttgctatgccattatccattccatcacttgatcca
tcagcacagggagatcaaaagcatcacccaatttcaatgcctcttggggctcctcctctt
ccacccggacctcatccgtcccttatggctgcaaatcagcaacaatcgtaccaacaaaat
cttcaacatatgcctcaacaacaacatcagcaacaccaccaagcactccctcagcaaatg
ccccctatgcccatgccacctaatatgcaacaactgcaacctccttctcatttaccttta
ctcccacatccccatttaactcgtccaccacctcaaatgccccctcatggtatgtcatcc
tcaatacctggatccttgccaatgccatcctcggtcccctcacattcgatgcctggtccc
atgggaatgcaaggtacgatgaatcagatggtacctatgccacaagggcattatatgggc
atgaaccagatgcactctggatccttgcctacaaatggtcctcaacaggttggtggcttc
ccaaatgggatgccaaacatgcagggcccatcaaatgcaagtggcggcccaatgtatcca
cagggtggtgcttttaatcgagcgcaaggtgggcaaatgcatatgatgcaggggtataat
ccttaccagtctgggaatcaatctggtatgccacaatctcaacaaggtccaccccctcat
ggccaaccccctcctcaatag
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