Citrobacter sedlakii: JY391_19155
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Entry
JY391_19155 CDS
T07832
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
csed
Citrobacter sedlakii
Pathway
csed02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JY391_19155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csed03021
]
JY391_19155 (rpoD)
Transcription machinery [BR:
csed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JY391_19155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QUC29614
LinkDB
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Position
4035610..4037457
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEDMDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRTQYEVTRDTIKAK
GRSHADAQTEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgttacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagatatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgctgcttgctgaaaacacgaccagtaccgatgaagacgcagaagaa
gcggctgcgcaggttctctccagcgtagagtcggaaatcggtcgcaccaccgatccggtg
cgcatgtacatgcgcgaaatgggcactgttgaactgttgacccgcgaaggcgaaatcgac
atcgcaaaacgcattgaagacgggatcaaccaggttcagtgttctgttgcggaatacccg
gaagccattacctatcttctggaacaatacgatcgcgttgaagcagaagaagcgcgtctg
tccgatctgatcaccggtttcgttgatccaaacgcggaagaagatctggcgcctaccgcc
acccacgtcggctcagaactgtctcaggaagacatggacgacgatgaggatgaagacgag
gaagacggcgacgacgacagcgcggatgacgacaacagcatcgacccggaactggcgcgc
gagaaattcgctgaactgcgtacgcagtatgaagtgacgcgtgacaccatcaaagcgaaa
ggccgtagtcatgcggatgcgcagaccgagatcctcaagctttctgaagtgttcaagcag
ttccgtctggtaccgaagcagttcgactacctcgtgaacagcatgcgcgtgatgatggac
cgtgtgcgtactcaggaacgcctgatcatgaagctctgcgttgagcagtgtaaaatgccg
aagaagaacttcatcaccctgttcaccggcaacgagaccagcgaaacctggttcaacgcg
gctatcgcaatgaacaaaccgtggtctgaaaagctgcacgacgtggccgatgacgttcac
cgcggcctgcaaaaactgcagcagattgaagaagagaccggcctgaccatcgagcaggtg
aaagacatcaaccgtcgtatgtccatcggcgaagcaaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggc
ctgcagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagacaag
tttgaataccgtcgtggttacaagttctccacttatgcgacctggtggatccgtcaggcg
atcacccgctctatcgcagaccaggcgcgcaccatccgtatcccggtgcatatgattgag
accatcaacaagctcaaccgtatctcccgccagatgctgcaagagatggggcgtgaaccg
acgccggaagaactggccgaacgtatgctgatgccggaagacaagatccgtaaagtgctg
aagatcgccaaagagccgatctccatggaaaccccgatcggtgacgatgaagattcgcat
ctgggtgatttcattgaggataccaccctcgagctgccgctggactctgccactaccgag
agcctgcgtgctgccacgcacgacgttctggctggcctgaccgcccgtgaagccaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccatacgctggaagaagtgggtaaa
cagtttgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaacta
cgccacccgagccgctctgaagtgttgcgtagcttcctcgacgattaa
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