Cynoglossus semilaevis (tongue sole): 103389766
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Entry
103389766 CDS
T04866
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X2
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103389766 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csem03400
]
103389766 (lig4)
Enzymes [BR:
csem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103389766 (lig4)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103389766 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
103389766
NCBI-ProteinID:
XP_008323547
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All DBs
Position
14:15852773..15860317
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AA seq
910 aa
AA seq
DB search
MEGTSKSTIEDGPSVASQVPFLHLCTALEKIQKSKLRPEKSKILGDLIKSWRDFHSVLHK
GNLKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAANNAGKQKDLIKKSLLQLI
TQSSALEQKWLIRMILKDMKLGISKETVLHVFHPDAVELFNVNTDLNKVCQQLHDPSVSL
SEVSIGIFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
YEYTQQFGGSPLEGSLTPYIHNVFKNHVVNCILDGEMMAYNPTTESFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNNQKFGNETLRKRCEILQTVFNPVKGRIHMVPKTDARTMQEVV
DALNDAIDNREEGIMVKDPLSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
SSILCGAERPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEQIREDKEWHQCMT
LAELDQFRNKASGKLASRHLSISNDEPQKKKRKFAPKPKKVIGIMDHFKAQDLSGVKKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGVVVQNPGPDTYCVIAGAKNMRVKNLILSD
QHDVVWAWWLLECLDQKQVVPWQPRHMIHISPSTREQFAKEYDSYGDSYFVDTDVQQLQE
VFGRIPAAAAADTIDVGQVEQRFGWDNIPTSMFRPFTAYMDSCADLGDPDTLMPASCLDI
RALEFRFHGGTVLPTLEEGVSHVIITEETKMEELKTVRRRFTKKFKIVRDSWVTDSIRAG
HLLNDNIYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaacgtctaaaagcaccatagaggatgggccttcagttgcatcacaggttcca
tttcttcacctgtgtactgctttggagaaaatccaaaagtcaaagttacgtccagaaaaa
tccaagatccttggggatttaattaagtcgtggagagactttcattctgttctccacaaa
ggcaacttaaaaacaacagactccttctacccagccatgcgcctcatagttcctcctttt
gaacgagagcgaatggcatatggtatcaaagaaagcatgttagctaagctctacattgat
gtgttaggcctcccaaagaatggcccagaagccaataaactcctaaactaccgtgcccct
actacctcccaaggagaagctggagactttgctggcatggcatattttgtcttaaagaaa
cgatgcaccagccaaggaaacctcagcattaaagaggtcaacgactttctggactcagta
gctgccaacaatgcagggaaacaaaaggatctgataaaaaagagtctcctgcagctcatc
acccagagctcagctcttgagcagaagtggctgatcagaatgattctaaaggacatgaag
cttgggatcagtaaagagacagttcttcatgtctttcacccagacgctgtagaacttttt
aatgtcaacacagacttgaacaaagtgtgtcagcagcttcatgacccctctgtgtcatta
agtgaagtttctatcggaattttctctgcctttaagcccatgttggcagctgtggctaac
atacgcaatgtagagaaacagatgggcaatagccctttctacatccagaccaagctggat
ggagagcgcattcagctgcacaaagatggagatgtctacaagtattttagccgcaacgct
tatgaatacacacagcagtttggagggtcccctctggagggttcactgaccccttatatt
cataatgtttttaagaaccatgtagtgaactgcattctggatggggagatgatggcttac
aaccccactacagagagcttcatgcagaaaggaagcaagtttgacatcaagaggctcatg
gaggactcagagctgcagacgtgcttctgtgtcttcgacgtcctgttagtcaataaccag
aagtttggtaatgagacactgagaaaacgctgcgagatcctgcagacagttttcaaccca
gtgaagggaaggatccacatggtgccaaagactgatgcgagaaccatgcaggaggtggtg
gacgctctgaacgatgcaatagacaatagagaagaagggatcatggtcaaagatccatta
tctgtctataaacctgacaaacgaggggaaggatggctgaaaataaagccggaatacgtt
gatggattgatggacgagcttgacctcttgattgttggtggatactggggtaaaggaaga
cgaggtggaatgatgtctcatttcttatgtgccattgctgaagctcccaagcctggagag
aagccgtcagttttccactctttctgccgcattggctccggctacactatgaaggagttg
tatgatctcggtttaaagttagccaagcactggaaggtttaccggaaaaatgatccacca
tcatctatcctgtgtggagcagagagaccagaggtctacattgagccttgcaactctgtt
atcatccaagttagggcggctgagattgttggaagtgacatgtataaaaccaactgcaca
ctgcgcttcccaaggattgagcagatccgagaagacaaggagtggcaccagtgtatgact
ctggcagagctggatcagttccgcaacaaagcgtcaggaaaactagcttcgaggcatctt
agcatcagcaacgacgagccacaaaagaagaaacgcaagtttgcaccaaagcctaagaag
gtgattggtattatggaccacttcaaagctcaggacctttccggggtcaagaaggagacg
gatatgtttgaagatgtagaattctgcattctaaatgggacagaggaccatcccaaagct
gagctggagaaaggagttgcaaggtgtggaggagttgtggttcaaaaccctggaccagac
acctactgtgtgatcgctggtgccaagaacatgcgagtgaagaacctgattttgtccgac
caacacgatgtagtttgggcctggtggctgttggagtgtctcgaccagaaacaagtggta
ccctggcaaccgcggcacatgatccacatctcaccctctaccagggaacaatttgccaag
gagtacgacagctacggcgacagttactttgtggacacagatgtgcagcagctgcaggag
gtctttggccgcatccctgctgctgctgctgctgacaccatagacgttggtcaggtggag
cagcgttttggctgggacaacatccccactagcatgttcagacctttcacagcttacatg
gacagctgcgctgacctaggagaccctgacacgctcatgcccgcctcctgtttagacatc
agagctctggagtttcgcttccatggaggcacagtgctgccgacactggaggaaggtgtt
tcacacgttatcatcactgaagaaacaaagatggaggagctgaagacagtgaggagacga
ttcacaaagaagtttaagattgtaagagactcgtgggtgacagattcaatcagagcagga
catctgctcaatgataacatttacttagtttga
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