Cynoglossus semilaevis (tongue sole): 103390558
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Entry
103390558 CDS
T04866
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03013
Nucleocytoplasmic transport
csem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103390558 (upf3b)
03015 mRNA surveillance pathway
103390558 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103390558 (upf3b)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103390558 (upf3b)
mRNA cycle factors
P-body specific factors
103390558 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
103390558
NCBI-ProteinID:
XP_008324683
LinkDB
All DBs
Position
15:complement(1126141..1130300)
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AA seq
502 aa
AA seq
DB search
MKEDKENTRPKDKRVEIKGEDGEKMEKCKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
DLDYIEFFSNDTSLYPHLFARAYINFKNPEDIVLFRDRFDGYVFIDNRGQEFPAVVEFAP
FQKTAKKRSKKKDAKCGTITEDPDYKKFLEYYNGDEEKLSSTPETLLEEIEARSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWRDEERRKRKEAEKMKRLDK
PLEKDKEQAKEEPKIKVIWDEVTFLFNVYRIEGNVMLFFFLQLLKKTDRADDTDPEKPKE
KVKKTEKHNKEERCSGGLDHKRRQSGENKEERARKTDDDGRKEFRERNAERDKDREREKE
RRLKEKERLRRQDEERRRRRERQDGENSCRKREEDVKKEKKHVIMERRNGEDSTPGEKFV
SDNRKEEGSKRERLRNKDRPAIQLYQPGARSRNRGGGEAGAGGRGGGRGAGEGGGGGGSG
DNNASKSKPDAEMKKVSDKGVV
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaatactcgaccgaaagacaagagggtggaaataaagggtgaa
gatggagaaaagatggaaaagtgtaaagaaaagaaagaagccatgacaaagatcgtaatc
aggcgattgcctccaagtctgacaaaggaggagctggaggagcagctgcaacctctgcca
gatctggactacattgagtttttctccaacgacaccagtctttacccccacttgtttgca
agggcttacatcaacttcaaaaatccagaggacattgttctcttcagagatcgctttgac
ggatatgttttcattgacaacagaggtcaggaatttcctgccgttgtagagtttgcgcca
tttcagaaaacagccaaaaagagaagtaagaaaaaggatgcaaagtgtggaactatcact
gaagatcctgattacaagaagttcctggaatattataacggtgatgaagaaaagttgtcc
tcaacacctgagaccctgctggaggagatcgaagcgagatcaaaagaacttgttgcgaag
aaaaccactcctctactagacttcctgaaaaacaaacagagaatcagagaggaaaagaaa
gaagaacgccgaaggagagagctcgagcgaaagcgtctccgagatgaggagcgacggaag
tggagggatgaggagaggagaaagcgaaaggaggcggagaagatgaagaggctggataaa
cccctagagaaggacaaagagcaagcaaaggaagaaccaaaaataaaggtgatttgggat
gaggttacatttctttttaacgtttacagaattgagggtaacgtaatgttatttttcttt
cttcagttgctaaagaaaacagacagagctgacgataccgatcctgagaaaccgaaggaa
aaggtgaagaaaaccgagaagcacaataaagaggagaggtgttcaggaggtttggatcat
aagagacgacagagtggggaaaataaggaggagagagcgaggaaaaccgacgacgacggg
agaaaagagttcagagagcgcaatgcagaacgagataaggatcgggaaagagagaaggaa
cggcggctgaaggagaaggagcgactccggcgacaggatgaagagcggcgaagacggcga
gaacgtcaagacggagagaactcgtgcagaaagagggaggaagacgtcaagaaggagaag
aagcacgtgataatggagagaagaaatggcgaagattccactcccggggaaaagtttgtc
agtgacaacaggaaagaggagggaagcaaaagagaacgactgagaaacaaagaccgacct
gctattcagctgtaccagcctggggccaggagccgcaatcgaggaggaggagaagcaggt
gcaggaggaaggggaggaggacgaggagctggtgaaggaggaggaggaggaggcagcggt
gacaacaatgcttccaaaagcaaaccggacgctgagatgaaaaaagtgtctgacaaagga
gtcgtctga
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