Cynoglossus semilaevis (tongue sole): 103396815
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Entry
103396815 CDS
T04866
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03030
DNA replication
csem03410
Base excision repair
csem03420
Nucleotide excision repair
csem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103396815 (lig1)
03410 Base excision repair
103396815 (lig1)
03420 Nucleotide excision repair
103396815 (lig1)
03430 Mismatch repair
103396815 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csem03032
]
103396815 (lig1)
03400 DNA repair and recombination proteins [BR:
csem03400
]
103396815 (lig1)
Enzymes [BR:
csem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103396815 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
103396815 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103396815 (lig1)
DNA replication proteins [BR:
csem03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103396815 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103396815 (lig1)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103396815 (lig1)
NER (nucleotide excision repair)
Other NER factors
103396815 (lig1)
MMR (mismatch excision repair)
Other MMR factors
103396815 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
103396815
NCBI-ProteinID:
XP_016897614
LinkDB
All DBs
Position
20:complement(14436667..14479875)
Genome browser
AA seq
931 aa
AA seq
DB search
MQRSIASFFQPKSKDKEVQKKTAAEPVKKPVKSPLKVQNGVQETNSPVKKVVKRSRQILD
SDDDDSDVDEAPVVKEKVSDKRQGDKGVQRQTEKKDGVFKAVPTPLSPPPAPSTPVTPAT
PASSASPGTPTTPSSISPSGIVKRKTARKMLPKRKLDQSRSSSESQKEESEVKEQQGQES
KRPRVEVVDDSPGSPADPVEEGAKMEVEETPVTQVNSPDEEEEAENAKEGRRAASADEEE
KKAEGAEKKNEVKKGAAAAKKEKKMVEKDREEGEGEGEEEGEEEGERSPKSQVAKEQGDK
EAAKKTPISTFFAPRKSAVKMEKNEGEKKESGGRRSSGEESKDTKSESTSGQTEYDPSRP
NYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCV
YLCLNQLGPAYMGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQR
MMFQPASLTAGGVFKKLKEIASMSGNSVSKKKINVFTLLVSLLFVLVVVTDRSLAGKLRI
GLAEQSVLSALTMAVCLTPPGQGFPPEVIDAGKGMSAESRRAWIEEKSLILKQTYWPPPG
VPLRPMLAHPTKGVGEVLKKFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSK
YPDIIARIPKVKTDSVVSCVLDTEAVAWDREKKQIQPFQVLTTRKRKDVDATEIKVQVCV
YAFDLLYLNGESLVRQPLSRRRSLLKDSFSEVEGEFVFARSINSNNTDTIAEFLEQSVRD
SCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGG
FLLACYDEENEEFQSVCKIGTGFKDEDLEQHYKFLKVDPEKGISLRFPRFLRIRDDKKPE
DATSGAQIADLYQKQQQIQNQGEKADLEDYY
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatagcatctttctttcagcccaagagcaaagacaaggaggttcagaag
aagacggcggctgaaccggtgaagaagcctgtaaagagtccactcaaggtgcagaacggc
gtgcaggaaaccaattcacccgtcaagaaagtggtcaagcgcagtcgtcaaatcttggac
agcgacgacgatgacagcgacgtcgacgaggccccggtggtgaaagagaaggtcagcgac
aagagacaaggagacaaaggagttcagaggcaaacggaaaagaaggatggagtcttcaag
gcggtgcccacacctctgtctcctccaccagctccatccacccctgtgactccggccacc
ccggcctcctcagcctccccaggaacccccaccacccccagctccatctccccgtcagga
atcgttaaacgcaagactgccaggaagatgttaccgaagaggaagctggaccagagcagg
agcagcagcgagagtcagaaggaggagtcggaggtcaaggagcagcagggtcaggaaagt
aaacgaccccgggtggaggtcgtcgatgacagtccaggcagccccgccgaccccgtggag
gaaggagcaaagatggaagtggaagagacgccggtgacccaggttaacagcccagatgaa
gaggaggaagcggagaatgccaaggaagggaggcgggcggcgagcgccgatgaggaggaa
aagaaagctgagggggcggaaaagaaaaatgaagtgaagaaaggagccgcggctgccaag
aaggagaagaagatggttgaaaaggacagggaggagggagagggggagggagaggaagag
ggagaggaagagggagagaggagcccgaaaagtcaagtggccaaagagcagggagataag
gaggcggccaagaaaactcccatcagcactttctttgcccccagaaaatctgcagtgaag
atggagaagaacgagggcgagaaaaaggagagcggcgggaggaggagctccggggaggag
agtaaagacaccaaaagtgagtcaacttcaggacagacagagtacgatccgtccagaccc
aactatcaccccgtcgaccacgcctgctggaaacaagggcaaaaggtaccgtacctggcc
gtggctcggacctttgagaagatcgaggaggactctgggagactgaggaacatcgagacg
ctgtcgaacctgctccgctccgtgctgctgctctctccagacgacctgctgtgctgcgtg
tacctgtgtttgaaccaactcggtcccgcctacatggggatggagctcggtgtcggagag
acggtcctgatgaaagccgtcgctcaggccactgggcgacagttggacaaaatcaaagcc
gaggctcaggagaaaggagacttgggtctggtggccgagagttcccgtagcaaccagcgc
atgatgttccagccggccagtctgacagcagggggcgtgttcaaaaaactgaaggagatt
gcgagcatgagtggaaactcggtgagcaaaaaaaaaatcaacgtttttactctattagtc
tcattgttgtttgttcttgtggttgtgacggacaggtctctggccgggaagctgaggatc
ggcctggctgagcagagcgtcctgtcggcgctgactatggccgtgtgtctgacaccaccg
ggacaaggtttccctccagaagtgattgatgcagggaagggaatgagcgccgagagcaga
cgggcctggatcgaagagaagagtctgatcctcaaacagacctattggcctccaccagga
gtccccctcagacccatgctggctcaccccacaaagggcgtgggcgaggtgctgaagaag
tttgacgaggcggcgttcacgtgcgagtacaagtacgacggcgagcgcgcacagatccac
atcctggagaacggagaggtgcgaattttcagccgcaaccaggaagacaacaccagcaaa
taccctgacatcatcgcccgcatccctaaggtgaagacggactcggtcgtgtcctgcgtc
ctcgacaccgaagctgtcgcctgggaccgagagaagaagcagatccagccgttccaggtt
ctcaccaccaggaagagaaaggatgtggacgccacagagatcaaagttcaagtctgcgtc
tacgcctttgaccttctgtatctgaacggcgagtccctggtgcggcagccgctgtctcgg
cgtcggtccctcctgaaggacagcttctctgaggtggagggagagtttgtgttcgcccga
tccatcaactccaacaacaccgacaccatcgccgagttcctggagcagtcggttcgagat
tcctgtgaaggtctaatggtgaagacactggagaaggacgccacctatgaaattgccaag
cgctctcataactggctgaagttgaagaaggactacctagagggcgtcggagacaccgtg
gacctgtgcgtgatcggcgcctacctggggaagggcaagaggacgggcacctacgggggc
ttcctgctggcctgctacgatgaggagaacgaggagttccagtccgtctgtaagatcggc
acaggttttaaagacgaagatctggagcagcattacaagttcttaaaggttgaccctgag
aaaggaatttctctgaggtttcctcgcttcctgagaattcgagacgacaaaaaacccgag
gacgccacgagcggagctcagattgcagatttgtaccagaagcagcagcagatccagaac
cagggggagaaggcggacctggaggactactactga
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