Cylindrospermum stagnale: Cylst_0058
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Entry
Cylst_0058 CDS
T02398
Name
(GenBank) ATP dependent DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csg
Cylindrospermum stagnale
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cylst_0058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csg03400
]
Cylst_0058
Enzymes [BR:
csg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cylst_0058
DNA repair and recombination proteins [BR:
csg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cylst_0058
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AFZ22440
UniProt:
K9WPW9
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All DBs
Position
65209..66501
Genome browser
AA seq
430 aa
AA seq
DB search
MNITVYIESKRNTNKRIPAEIRERWNNRILQRSLHLMGTAGAIQYLADYGRGIALPKVVN
LAICAESEGYPEMALGFWNKAFELETGEKTPAQPANTGSVTTATSNPPKTPKNLILVKDL
PPHLQPGHIVTMQPVDASSNGLRPAGSERTYYINSPDYWGQPKRDGNRLIVIATKKQIYY
QSRSTRIKEQPSIEINQALLEAATQLGSFVLDGELYYRSVTLSEHRTGSQAATVNIAAGA
ANIPPTPVYAIFKSLWFSGKDLTTVTEAERIAAGEEIGKYLQTDFFEVVPTARTSQEKAE
LASKQQLEAREGEIWVLKNCTYIGGKDTRTLAIVRTKYCLELDLVIIGLTSKNDPSRPFS
AIMVAQEKEGKLVPMGLVGTGFTQQDMLEIARRHAANPGGVKITVRSQGLTESGKLWHGR
YVGFCEENEP
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcactgtatacattgaatcaaaacgaaataccaacaagagaattcccgcagaa
atccgggaacgctggaataatcgcattcttcaacgctcattacacctgatgggtactgcg
ggagctatccaatatcttgcagattatggacggggaattgctctacctaaagttgttaac
ttggcaatctgcgccgaatcagaaggttacccagaaatggctttggggttttggaataaa
gcatttgagctagaaacaggagaaaaaacaccagcacagccagcaaatactggttctgtc
accacagcaacttcaaatcccccaaaaacgcccaaaaacctgattcttgtcaaggattta
ccaccccatttgcagccaggacacattgtcaccatgcagccggtagatgcatcaagcaat
gggctacgccccgctggaagcgaacgcacctactacattaactcacccgactactgggga
cagccgaaacgcgatggtaataggttaattgtcattgctaccaaaaaacagatttattac
caatcacgttctacgagaattaaagagcaaccctcaatagaaatcaaccaagcactatta
gaagctgcaacccaattaggatctttcgtactagatggcgaattgtactaccgttcagtc
actctcagcgaacatcgtacaggttctcaagcagccaccgtcaatatagccgcaggggca
gcaaatattcccccaacgcccgtttacgccatatttaaaagtttgtggttttcaggaaaa
gacttgacaaccgtcacagaggcagaaaggattgcagcgggcgaagaaattggcaagtat
ctgcaaaccgacttttttgaggtagtgcctacagcccgtactagccaggaaaaagccgaa
ctggcatctaaacagcagttggaagctagagagggggaaatttgggtactgaaaaactgt
acttatataggtggcaaagatacccgaacattggcaatagtccggacaaagtactgcctc
gaattagacttagtaattatcggcttaacttccaaaaacgaccctagccgaccttttagc
gccatcatggtagcccaagaaaaggaaggaaagttagtgccaatggggttagtgggaaca
ggctttacacagcaagatatgctagaaatagcccgtcgtcatgcagccaaccccggaggc
gtgaaaatcacggtgcgatcgcaaggactaacagaaagcggaaaattgtggcatgggcga
tatgtcgggttctgtgaggagaatgagccttaa
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