Chryseobacterium shandongense: EG350_02300
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Entry
EG350_02300 CDS
T05920
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EG350_02300 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csha03400
]
EG350_02300 (ligD)
Enzymes [BR:
csha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EG350_02300 (ligD)
DNA repair and recombination proteins [BR:
csha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EG350_02300 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AZA56102
UniProt:
A0A3G6MK24
LinkDB
All DBs
Position
complement(475991..477871)
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AA seq
626 aa
AA seq
DB search
MLAKPHPEAFDDEHWVFEIKWDGYRAVADLTDEPLFYSRNGISFLSKFEKVTQDFNLQKH
KMILDGEIVAYDENGRPNFQLLQQIGDNPDLALVYQVFDILWLNGHSTEELPLIQRKELL
KEALVETDVIKYCDHIQENGISFFNQMKKMKLEGMIAKKADSEYTENHRTSDWLKIKFTN
TEEAIICGFTEPRGSRVGFGALILGKYVNGKLIYSGHTGTGFNRESILELHERLKKIVIK
KSPFETRPKTNMPVTWTQPELVCEIKYSEITKDGIFRHPVFVALREDKEPEEVKNTAGEK
EEANQNTKVMKATAHKKTRTSENEKEITLNRHKVKLTNQDKIYFPKDDITKGDVIEYYQS
VADYILPHLKNRPLSLNRFPNGIEEQSFYQKDASDNIPDWVKTTQVYSESNDKYIDYIYC
NDKATLAYLNNLGCIDMNPWNSSLPDLDHPDFLVLDLDPSKKNTFDDVIETALQVNEVLN
SIKIKGYCKTSGSTGIHVYIPMGGKYDFDQIKDFAHILMKQVHEKLPKITTLERSLQKRD
NNKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLEWNEVKAGMKPTDFNINNALERIKD
KGDLFKPVLGKGIDMMKALELLQDME
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaaccgcatcctgaagcatttgatgacgaacattgggtttttgaaataaaa
tgggatggataccgtgcagttgcagatctcactgatgaacctttattctattcccgcaac
ggaatttcttttttatctaagtttgagaaagttactcaagattttaaccttcagaagcac
aaaatgattctggatggtgaaattgtagcgtatgatgaaaacggcagaccgaatttccag
ctgcttcagcaaattggagataacccagatcttgctcttgtgtatcaggtctttgatatt
ctttggctgaacgggcattctacagaagaacttccattgattcaaagaaaagaacttctt
aaagaagcattggtggaaactgatgtcatcaaatattgcgatcatattcaggaaaacggt
atttcctttttcaaccagatgaaaaagatgaagttggaaggcatgattgctaaaaaagca
gacagcgaatacaccgaaaatcaccggacctccgattggcttaaaataaaatttacgaac
actgaagaggctattatctgtggatttacggaaccccgcggatcaagagttggttttgga
gcattgatccttggaaaatatgttaacgggaaactgatctattccggtcacaccggaaca
ggtttcaacagagaatccatcctggaacttcatgaaagattaaagaagatcgtcataaaa
aagtcaccattcgaaaccaggcctaaaaccaacatgcctgtaacctggactcaacctgaa
ctggtatgcgaaataaaatattccgaaattaccaaagacggcattttccgccaccctgtt
tttgtggcacttcgtgaagataaagaaccagaagaagtaaaaaatacagccggagaaaaa
gaggaagccaaccaaaatacaaaagttatgaaagctacagcccataaaaaaacacgcact
tctgaaaacgaaaaagaaataacattaaacaggcacaaggtaaagcttaccaatcaggat
aaaatctattttcctaaagatgatattacgaaaggtgatgtcatagaatattatcagtct
gttgcagactatattttaccccatctgaaaaacaggccactttcccttaaccgtttcccg
aacggaattgaagaacaaagtttttaccagaaagatgccagtgacaatatcccggactgg
gtaaaaaccacgcaggtctattcggaatccaatgataaatacattgattatatttattgc
aacgacaaagcgactctcgcgtatctgaataatttaggatgtattgatatgaatccgtgg
aattcttctttacctgatctggatcatcctgactttcttgttttagatcttgatccttca
aaaaagaatacctttgatgatgtcatcgaaacagctttgcaggtaaatgaggttttaaat
tccattaaaattaaagggtattgcaaaacttcaggaagcacgggaattcacgtctatata
ccgatgggcggaaagtatgattttgaccagataaaagattttgcccatattctgatgaag
caggttcatgaaaagcttccgaaaattacaactttggaaagaagccttcagaaaagagat
aataataaaatttatctagactatcttcaaaacagaaccggacaaactttagcgagtgct
tacagtttgcgaccaaaagaaggagcgtctgtttccatgcctttggagtggaatgaagta
aaagcgggcatgaagccgaccgacttcaatattaacaacgcattggaaaggattaaagat
aagggagacttatttaaacccgttctgggtaaaggaattgatatgatgaaggcgctggaa
ttgttgcaggatatggagtaa
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