Chryseobacterium shandongense: EG350_18690
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Entry
EG350_18690 CDS
T05920
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG350_18690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csha03400
]
EG350_18690 (mfd)
Enzymes [BR:
csha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG350_18690 (mfd)
DNA repair and recombination proteins [BR:
csha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG350_18690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AZA59091
UniProt:
A0A3G6MTK4
LinkDB
All DBs
Position
complement(4131811..4135182)
Genome browser
AA seq
1123 aa
AA seq
DB search
MQLKTVSEKFLPDLLQKEFGKEIFIQLENHQNISVKGSAGSSVSIFVAELFLTRKKTVLY
IVDDKEDALYANTEMEDLLGKDKVLYFPATHMEPYQVEKTQNANLVLRTEAINKITSGKS
AKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLHHYNFQQADFVSEPGEF
SVRGGIVDVFSFSNEKPYRIIFFGNEIESIKTFDIETQLSVDKVNDFQLVSNMNFTVTGN
RVSLLQLLPKESIVVSKNGIIGMQKLKTFYEKALEKYDTLNKDISHRAPQELFISDQEFL
FDYKKFTTVDFGSVPIEGLIELQEVKINQIPQPSFHKNFELLIEDLEEKQNDGFDTWISF
SGEKQKERLESIFEELEHELPFKSFKSELHEGFVDHDHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPEGREVVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYINRFRTAKQKSETLDALKNG
KVDIVIGTHQLAGSTVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVETQLVGFNEEIIRDAVSYELQRDGQVYFINNRVENL
KEIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDEEFENLFENEEER
NKLFKTTKDINIDTDLELMLPDSYISNTEERLLLYQKLAEINNEKELEKFEFELKDRFGD
LPEEAENLLKSVSLKWLASEIGFEKIVMKNGVFLGYFPGNPQDRFYQIDKFRHIINYLTQ
NPAEAQLKEKSGKEGNQLMMRKDKIRNVDEVNSLLKSMLKPVS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaaactgttagtgaaaaatttcttccggatcttctacagaaggaatttggt
aaagaaatttttatacagctggaaaatcatcaaaatatctctgtaaaaggcagtgcggga
tcgtccgtttctatttttgtagcagagctttttcttacccgaaaaaagactgtcctttat
attgtggatgataaagaggatgctttatatgcgaatacagaaatggaagacttattggga
aaagataaggtgttgtattttccggcaactcatatggaaccctatcaggttgagaaaacg
cagaatgcaaatctggttttgagaactgaagccatcaataaaattacttcaggaaaatct
gcgaaagtaattgttgcttacgcaggtgcactttctgaaaaagtgttgaaaaaagaagat
tttaaagccatttctcatcatataaaagttggcgatcagcttgattttgattttgtggat
gagcttctgcatcattacaatttccagcaggcagactttgtttctgaaccgggagagttt
tctgtaagaggtgggattgtagatgttttctcattctcgaacgaaaaaccttacaggatc
attttttttggtaatgaaattgaaagcattaaaacatttgatatcgaaacacagctttct
gttgataaggttaatgattttcagctggtttccaatatgaattttacggtcaccggaaac
cgcgtttctcttcttcagcttttgccaaaggaaagcatagtcgtttcaaaaaatgggatt
atcggcatgcaaaagcttaaaacgttctatgaaaaagcattggaaaaatatgatacgcta
aataaagatatttctcacagagcgcctcaggaacttttcatctccgatcaggaattttta
tttgattataaaaagtttactactgtagacttcggaagtgttcctattgaaggacttata
gagcttcaggaagtaaaaataaaccagattccgcagccttcttttcataaaaactttgag
ctgctgatagaagacctggaagaaaaacagaatgacggttttgatacctggatttcgttt
tccggagagaaacagaaagaaaggctggaatctatatttgaagaattggagcatgagctt
ccgtttaaaagtttcaaatctgaacttcatgaagggtttgtagatcatgatcataaatta
cttgtgtacacagatcaccagattttcgaccgttatcagcgctacaaagcaaaaaataca
tttgcgaaatcagaacagcttaccctgaaagatttaatgtctctgaaaataggggattat
attgcgcatattgatcatgggattggaaaattcatggggttggtaaaagtaaataatgac
ggtaaaatccaggaatgttttaaacttacctacaaaaacggggatttgttgtacgtgagc
attcattcacttcataaaatttcaaaatataacgggcccgaaggacgggaagtggttctg
agcaaactcggatcacctgcctggaaatctttaaagcaaaaaacaaaagcaaaagtaaag
cagattgcttttgatcttataaagctttacgctcaaagaaagactgccaaaggttttgcc
tacaccccggattcttatttgcaaaacgaactggaagcaagctttatctatgaagatact
ccggatcaggagaaggcaaccattgacgtgaaaaaagatatggaggcagatacggtaatg
gacaggctggtttgcggagatgtaggtttcggaaaaacggaagtggcaatccgggcggca
ttcaaagcggcaacagacggaaagcaggttgctgtactggttcctaccacgattctggct
ttccagcactatagaagttttaaagaaaggcttaaagattttccggtaaacgttgcatac
atcaaccgtttcagaacagccaagcaaaaatctgaaacgttggatgcccttaaaaatggt
aaagtggatattgtaatcggaacgcatcagcttgcgggaagtaccgtaaagttcaaagat
ttgggattacttattattgatgaggagcataaattcggggtttcggtaaaagataaattg
aagaccctgaaaagtaatgttgatacgcttacccttactgctacaccaattccgagaaca
ttgcagttttctttaatggccgcaagggacctctcggtaatcaaaactcctccaccaaac
agacagcctgtggaaacgcaattggttggttttaatgaagaaataatccgggatgcggtt
tcgtatgaacttcagcgcgatggacaggtctattttatcaataacagagtagaaaacctt
aaagaaattgcaggattaatacagcgtctggttccggatgcaagggtcattacaggacac
ggacagatggaagggaagcaactggagaaaaacgttctcgattttatggaaggaaaatat
gacgttcttgtttctacaacaattgttgaaagcggggtggatgttccgaatgccaatacc
atttttattaatgatgcacaacgtttcgggatggcagatctccaccagatgagaggaaga
gtagggcgtagcaatagaaaagccttctgttacctcattacaccaccctatgatatgatg
acctccgatgccagaaaaagactggaagccatcgaacaattttccgatctcggaagcggt
tttcagattgccatgaaagaccttgaaattcgtggagccggagatttattgggcgcggag
caaagcggatttattaatgaaatgggatttgaaacctatcagaaattaatgcaggaggca
cttgaggaactgaaagatgatgaggagtttgaaaatttatttgaaaatgaagaggaaaga
aataaactctttaaaacaacgaaagatatcaatatcgatacggatctagaactgatgctg
ccggattcttacatttcaaatacagaagaacgattactgctatatcagaaactcgccgaa
atcaataatgaaaaagaacttgaaaaatttgaatttgagttgaaagaccgtttcggtgat
ctacctgaggaagcagaaaatttactaaaaagcgttagcttaaaatggcttgcatcagaa
atcggatttgagaaaattgttatgaaaaacggagtgtttcttggatattttccagggaat
ccacaggataggttttatcagatagataagttcaggcatattattaattatcttacccaa
aatcctgcagaggcacagcttaaagaaaaaagtggtaaagaaggcaatcagctgatgatg
aggaaagataaaattcgtaatgttgatgaggtgaattctcttttaaaatcgatgttaaaa
ccggttagttaa
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