Campylobacter showae: CSHOW_1282
Help
Entry
CSHOW_1282 CDS
T07015
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csho
Campylobacter showae
Pathway
csho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSHOW_1282 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csho03400
]
CSHOW_1282 (mfd)
Enzymes [BR:
csho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSHOW_1282 (mfd)
DNA repair and recombination proteins [BR:
csho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSHOW_1282 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
QCD49206
LinkDB
All DBs
Position
complement(1313129..1316086)
Genome browser
AA seq
985 aa
AA seq
DB search
MQSEVFEYFLNGGDAQLLVCEDDKEAIAALSAAEFAGLKVFRLPDFRAREGDDLRSFSAE
LFELSSELAKFYEFEGKKLLISPVCTVLNKLPGKKHLQKLTLNFGDKIDPKELAQKLLRF
GYEAVGIVESEGEFCVRGEIIDIFCVGAQEPNRILLFDDEIESIRHYSTQTQISNKTELK
SVEISPFIAALGEAEFEKTFEKIKEIETDALISDLKTLGFWAIDGFIDYTREFKTVLTKK
FDGFERGLGEVANLPVLPAAKVYKDLSVTLNADFFELNKNKKIKVLARNEGLFNALNLSE
YKNVEFVQTQAALNLVSPSEIIVSLNKFEKKKRAKKPSLAIDELKAGDYVVHEEYGIGKF
TGLEKLTVLGRTREFVVIVYQNEDKLLLPVEHLNLIDRYVAGSGSIAVLDRLGKANFAKI
KEKVRAKLFVIASKIISLAAQRELIRGEIIEKEDAEYLNFLQNAGFAYTRDQERASSDIA
NDLKSGKVMDRLLSGDVGFGKTEVAMNAIFKCVKSGFQALFFVPTTLLSSQHFKSLKERL
GKFDVSVFKLDRFTSAKEKAAAVKALEAGQPCVCVGTHSLLSVKPSNLGLIIIDEEHKFG
VKQKEKLKEISSASHVLSMSATPIPRSLNMALSSVKGYSVLQTPPSSRLDVRTSVREWDE
KAVKEAVMRELRRGGQIFYIHNHIATMPQAKKQILDIMPNLRILTLHSKIDAKTTEEEMM
KFENGEYDVLLSTSIVESGIHLPNVNTIIIEGANKFGIADLHQLRGRVGRSDKQAYCYFL
VEDKNALSADALKRLVALESNSFLGSGSVLAYHDLEIRGGGNLVGEAQSGHIEAIGYSLY
IKMLEEEINKLLNKESFESAKIDLKLSINAFLNSEFIGEDRLRLELYRRLSKCKEVAEVY
EIEGEIEDRFGKPDIYTKQFLSLIIIKILAIKVGFKAISNAEQNIVLTAQNGEQTRLKSK
SKDDDDVIEEILIYLRKLNKGRAEK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaagtgaggtttttgagtattttttaaacggaggcgatgcgcagctactcgtctgc
gaggacgacaaggaggccatcgcggctcttagcgcggcggaatttgccgggcttaaggta
tttagattgcctgattttagagcgcgcgagggcgatgatctgcgcagctttagcgccgag
cttttcgagttatcatccgagctggccaaattttacgaatttgagggcaaaaagctcctc
atcagtcccgtttgcacggttctaaacaaacttcccggcaaaaaacacctacaaaaactt
actctaaatttcggcgataaaatcgatccaaaagagctagcccaaaagctactgcgcttt
ggctacgaggcggtgggtatcgtggagagcgagggcgagttttgcgttcgcggcgagatt
atcgatattttttgcgtcggcgcgcaggagccaaaccgtattttgctttttgacgatgag
atagagagcatcaggcactacagcacgcaaacgcaaatttcaaacaaaaccgagctaaaa
agcgttgaaatttcgccttttatcgcggctctgggcgaagccgaatttgaaaaaaccttc
gaaaaaataaaagagatcgagaccgacgcgctaatcagcgacctaaagacgctcggattt
tgggcgatagacggctttatagactatacgcgcgaatttaaaacggttttgacgaaaaaa
tttgacggctttgagcggggtctaggcgaggtggcaaatttgcccgtattgcccgcggct
aaggtttataaagacctaagcgtaactttaaacgccgattttttcgagcttaataaaaat
aaaaaaatcaaggttttagcgcgtaacgaggggctttttaacgcattaaatttaagcgaa
tataaaaacgtagagtttgtgcaaacccaggccgcgttaaatttggtttcaccgagcgag
atcatcgtctcgctaaataaatttgaaaagaaaaagcgcgccaaaaaaccgagtctagcg
atcgacgaactaaaggcgggcgactacgtcgtgcacgaggagtacggcatcggcaaattt
acggggcttgaaaagctaacggtgctaggcaggacgcgcgagtttgtcgtcatcgtttac
caaaacgaggacaagctgcttttgcccgtcgagcatctaaatttgatcgacagatacgtc
gcgggcagtggcagtatcgcggttttagaccgcctaggcaaggcaaatttcgccaagata
aaagaaaaagttagagccaagcttttcgtaatcgcgtcaaagattatttcactagccgcc
cagcgcgagctaatccgcggcgaaatcatcgaaaaagaggacgcagagtatctaaatttc
ttgcaaaacgcgggctttgcctacacgagagatcaggagcgcgcatcaagcgacatcgca
aacgacctaaaaagcggcaaggtgatggacaggttgcttagcggcgacgtgggattcggt
aaaacggaagttgcgatgaacgcgatatttaagtgcgtaaaatcgggctttcaggcgcta
tttttcgtgccgacgacgcttcttagctcgcagcattttaagagcctaaaagagaggctg
ggcaaatttgacgttagcgtctttaaactcgatcgcttcacgagcgcgaaggaaaaagcg
gccgcggtaaaggcgctggaggcagggcagccttgcgtttgcgtgggtacgcactcgctt
ttatcggtaaagccatcaaatttaggcctcatcatcattgatgaggagcataaattcggc
gtcaagcaaaaagaaaaactaaaagaaatttcaagcgcctcgcacgtgctatctatgagc
gcgaccccgataccgcgtagcctaaacatggcgctttcaagcgtcaagggctactcggtg
ctacaaactccgccaagctcgcgcctagacgtgcgaaccagcgtgcgcgagtgggacgaa
aaggcggtaaaagaggcagtgatgcgcgaactgcgccgcggcgggcaaattttttacata
cacaaccacatcgccacgatgcctcaggcaaaaaagcaaattttagacatcatgccaaat
ttacgcatcctcacgctgcactccaagatcgacgccaagacgaccgaagaggagatgatg
aagtttgaaaacggcgaatacgacgtgctgctaagcactagtatcgtagaaagcggcata
catctgccaaacgtaaacaccatcatcatcgagggcgcgaataaattcggtatcgcagac
ctacatcagctacgcggacgcgttggcaggagcgacaagcaggcgtattgctacttcctg
gtcgaagacaaaaacgccctaagcgcagacgctctaaaacgcctagtcgcgcttgagagt
aattcgtttttgggctcgggcagcgtgctagcctaccacgatctagaaatcagaggtggc
ggcaacctagtgggcgaagctcaaagcggccatatcgaggcgatcggctactcgctctat
ataaaaatgcttgaagaagagataaataaactactaaataaagagagctttgaaagtgca
aaaatcgatcttaaactcagcataaacgcgtttttaaactcggagtttatcggcgaggat
aggctgcgcttggagctatatagacggcttagcaagtgcaaagaggttgccgaggtttac
gagatagagggcgagatcgaggatagattcggcaaaccggatatctacacaaagcagttt
ttaagcctcattataattaaaattttagcgataaaagtaggctttaaagccatctcaaac
gccgagcaaaatatcgtgctaaccgcgcaaaacggcgaacaaaccaggctaaaatcaaag
agcaaagacgatgatgacgtgatagaggagatcttgatctatcttagaaaactaaacaaa
ggacgggcggaaaaatga
DBGET
integrated database retrieval system
