Camellia sinensis (tea plant): 114281471
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Entry
114281471 CDS
T07364
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114281471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csin03400
]
114281471
Enzymes [BR:
csin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114281471
DNA repair and recombination proteins [BR:
csin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114281471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DRMBL
Motif
Other DBs
NCBI-GeneID:
114281471
NCBI-ProteinID:
XP_028079717
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MGDNTDTDTKFSVMCSLFTWMQKTKTSTKKRSKFRKFIDTYCKPCDYFSAIRLILPGLDR
ERGSYGLKESVLATCLVDALGMSRESEDALRLFNWRKAGPRAGVNAGNFALVAAEVLQRR
QGMTSGGLTIKELNELLDRLASSENRAEKTSVLSDLIKKTNAQEMKWIVIIILKDLKLGV
SEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKPVRPQLAMRVGNAN
TAWKKLHGKEVVVECKFDGDRIQIHKNGKEIHFFSRNFLDHPEYAHSMSDVIMENILVDR
CILDGEMLVWDTSMNCFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQIL
KERHELLRKVVKPIKGRLEILVPNGGLNDHRTSGEPRWSLIAYNVDDVERFFKETIENRD
EGIVLKDLGSKWEPSDRSGKWLKLKPDYVRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGL
AEHSTSNTYPRRYISFCRVGTGLSDEELDSVVTKLKPYFRKNEYPKKAPPNFYQVTNNSK
ERPDVWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFV
ELVHSNNGTTQKGTDYGVVQDNKPKRMKSSRKGEKKSVSVVPPHFIQTDISDVKGESLVF
SKMMFYFVNMPQTHSLDSLHKMVAENGGTFSMNLNNSVTHCIAAESKGLKFQAAKLRGDI
IHYSWLFDCCSQKKLLPLQPKYFLSLSDSSKKKLQEEIDELSDPYYWDLDIEDIKQLLSN
INRSEDSKTIDYYKRKFCPKDKWSCFHGCCIYFHPSAESSNLDSKVLIELALRRMRLAVA
MGGGKVSSSLSQATHLVVISPLGFNVEFDMILRSFSSAEVHLLHMKSLHVVGLQWLEDCL
DKEQKLQEAIYSLKPTGFKESNLGEWKHDPSLDDLSSMDIEHQQKNMLSSPTKDREHRKS
TAALINPRLLTSTQKDGKRERQMTH
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgggggataatactgatactgatacgaagttcagcgtgatgtgtagtctcttcacatgg
atgcagaagaccaaaacatcaacaaaaaagagatccaaattccgcaagttcatcgacacc
tattgcaaaccctgcgactacttcagtgccatcaggttgatcctccctggtcttgatcga
gaacgcggatcgtacggcctcaaggagtctgtgctcgccacttgcctcgttgacgccctc
ggcatgtctcgggagtctgaggacgccctccgccttttcaattggcggaaagccggcccc
agggctggcgtcaatgccggcaacttcgccctcgttgcggctgaggtgctgcaacgcagg
cagggcatgacttctggtggcctaaccattaaggaattaaatgagttgcttgatcgcttg
gcttcaagtgaaaatagggcggagaagacttctgttctttctgatctaatcaagaaaact
aatgcacaggaaatgaagtggattgtaatcataattttaaaagatctgaagttgggagtt
agtgagaagagcatctttcatgaatttcatccagatgctgaagacttgttcaatgtcaca
tgtgacttaaaactggtttgtgagaagttgagggatcgaaatcaacgtcataaacgtcag
gacatagaagttggaaaaccggtgcgtcctcaactggctatgagggttggtaatgcaaac
actgcatggaaaaagcttcatgggaaggaagtagttgttgagtgcaaatttgatggtgac
cgcattcaaatccataaaaatgggaaagagatacacttcttctcaaggaactttcttgac
catcctgaatatgcgcattccatgtcggatgttatcatggaaaatattcttgttgacagg
tgtatacttgatggtgagatgttggtttgggacacatctatgaactgttttgctgagttt
ggttcaaaccaggagatagccaaggcagcaaaggagggacttgacagtgaccgacagcta
tgttatgttgcttttgacattctgtatgttggagacactagtgttattcatcaaatcttg
aaagaacgtcatgagcttcttcgtaaagttgtaaagcctataaagggtcggttggaaatt
ttggttcctaatggtggtcttaatgatcatcggacttctggggaaccgcgctggtcgctt
attgcttataatgtggatgatgttgagagattttttaaagaaactatagaaaacagagat
gaaggtattgtgctgaaagaccttggttccaagtgggaaccaagtgatcgaagtggaaag
tggttaaagttgaagcctgattatgttcgagctggctctgatctagatgtgcttataata
ggaggatactacggctctggccgtcgtggaggagaggtggctcaatttttggtcggcctg
gcagagcattcaacatcgaacacgtaccctaggcgatacatttctttttgcagagtggga
actggactttccgatgaagagctcgattctgttgtaaccaaactgaagccttatttcagg
aaaaatgaatacccgaagaaggcaccgccaaacttttatcaagttacaaataactccaaa
gaaagaccagatgtttggattgagagccctgaaaaatcaattatactttctattaccagt
gatattcgaacaataagatctgaggtatttgctgcaccatatagcttgagatttccacgt
attgacagagtgagatatgacaagccctggcatgaatgtcttgatgtgcaatctttcgta
gaattggtacattcaaacaacggtaccacacaaaaagggactgattatggagttgtgcaa
gataataaaccaaaacgtatgaaatcctcaagaaaaggagagaaaaagagtgtttctgtt
gttcctcctcactttattcagactgatatttctgacgtaaagggcgagtccttggtcttt
tcaaagatgatgttttactttgtcaacatgccacaaacacattccctagattccttgcac
aaaatggtggcagagaatgggggaactttctcaatgaatttgaacaactcagttactcac
tgtattgcagctgaaagtaaagggctcaaatttcaggcagcaaagcttcgtggagatatt
attcattactcttggctctttgattgttgttcacagaagaagctcctccctttacagcca
aagtacttcctctctctttccgactcttcaaaaaaaaagctgcaagaagaaattgatgaa
ttatctgacccttactactgggatcttgacattgaagacatcaaacagctcttaagcaac
ataaataggtcagaagattccaaaaccatcgactattataagaggaaattctgtccgaag
gataaatggtcttgttttcatggttgctgcatttacttccacccttcagctgagtcttcg
aatttagattcgaaagttttaattgaactggctctgaggaggatgaggcttgcagttgcc
atgggtggtggcaaagtcagcagcagtctttctcaggctacccatttagttgtcatttcg
ccactgggattcaatgtggaatttgatatgatattgagaagtttctcatctgcggaagta
catcttttacatatgaaaagcttgcatgttgttgggcttcaatggttggaagactgcttg
gataaggaacaaaaattgcaagaagcgatatatagtttgaagcccactggcttcaaagag
tcaaacttgggagagtggaaacatgatcctagtctagatgacttgtctagtatggacatt
gaacatcaacagaagaatatgttatcttctcctaccaaagaccgagaacacagaaaaagt
acagctgctttaatcaacccaagacttttgacctctacccagaaggatggaaaaagggaa
agacaaatgacccactag
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