Cronobacter sakazakii ATCC 29544: CSK29544_03869
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Entry
CSK29544_03869 CDS
T03903
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSK29544_03869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csj03400
]
CSK29544_03869
DNA repair and recombination proteins [BR:
csj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSK29544_03869
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CSK29544_03869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UB2H
IF2_N
Kinesin
Microtub_bd
AAA_22
DUF87
DUF4686
Motif
Other DBs
NCBI-ProteinID:
AKE96814
LinkDB
All DBs
Position
complement(3998614..4000635)
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQR
FTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALG
ENIAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRD
KLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccgttcaaactcaattccgctttcaaaccttccggcgaccagcctgaggct
atccgccgcatcaaggaagggctggaggacgggctggcgcaccagacgctgctgggtgtg
acgggctcggggaaaacgttcaccatggcgaacgtcatcgccgatttgcagcgcccgacg
atggtgctggcgcctaacaaaacgctggcggcgcagctctatggcgagatgaaagagttc
ttcccggaaaacgccgtggaatatttcgtctcgtactacgactactatcagccggaagcc
tatgtgccgagctccgacacctttattgagaaggacgcgtcggtaaacgagcacattgag
cagatgcgtctgtcggccaccaaagcgctgctggagcgacgcgatgtggtggtggtggcg
tcggtctccgctatctatggtctgggcgacccggatctctacctgaagatgatgctgcat
ctcaccaaagggatgatcatcgaccagcgtgccattttgcgtcgcctgacggagctgcaa
tacacccgcaacgatcaggcgttccagcgcggcacctttcgcgtgcgcggcgaggtgatt
gacatcttcccggcggaatcagacgagctggcgctgcgcgttgagctgttcgacgaagag
gtggagcggctgtcgctgttcgatccgctcaccggcaccgtcgactccattatccagcgt
ttcaccgtctacccgaaaacgcactacgtcaccccgcgtgagcgcattgtgcaggcgatg
gaagagatcaaagtagagctggcggagcgccgcaaagtgctgctggaaaataacaaactg
ctggaagaacagcgcctgacccagcgtacccagttcgatctcgaaatgatgaacgagctg
gggtattgctccggcattgaaaactactcgcgctatctctctggccgtggccctggcgaa
gcgccgccgacgctgtttgactatctgccggcggatggcctgctggtggtcgatgaatca
cacgtcaccattccgcagatcggcgggatgtatcgcggcgaccgcgcgcgtaaagagacg
ctggtggaatatggtttccgcctgccgtcggcgctggataaccgcccgctgaagtttgaa
gagttcgaggcgctggctccgcagacggtgtatgtctcggcgacccccggcaactacgag
ctggaaaaatcgggcggcgagattatcgaccaggtggtgcgcccgaccggtctgctcgat
ccgattatcgaagtgcgcccggtggcgacccaggtggacgatttgctgtcggaaatccgc
aagcgcgtcgccatcaacgagcgcgtgctggtgacgacgctcaccaagcgtatggcggaa
gatttaaccgagtatctggaagagcacggcgagaaagtgcgctatctgcactcggatatc
gacaccgtggagcgtatggagattatccgcgatctgcgtcttggcgagttcgatgtgctg
gtgggtatcaacctgctccgtgaggggctggacatgccggaagtgtcgctggtggctatt
ctcgacgctgacaaagagggcttcctgcgctccgaacgttcgcttatccagacgattggc
cgcgcggcgcgtaacgtgaacggtaaagcgattctctacggcgataaaatcacgccgtcg
atggcgaaggcgattggcgaaaccgaacgccgtcgtgagaaacagcaggcgtataacgaa
gaacacggcattgtgccgcaggggcttaacaagaaagtggtcgatattctggcgcttggc
gagaatattgcgaaaaccaagccgaaaggacgcggaaaagggcgcaccgtggcagatgcc
gaagccgctgaactggcgctgacgccgaaagcgttgcagcagaaaattcatcagcttgag
gcgcagatggtgcaacacgcgcagaacctggagtttgaagaggcggcgcagttgcgcgat
aagcttcatcagttgcgcgagctgtttatcgccgcgtcgtaa
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