Coccomyxa subellipsoidea: COCSUDRAFT_15779
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Entry
COCSUDRAFT_15779 CDS
T02914
Name
(RefSeq) histone deacetylase 3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03082
ATP-dependent chromatin remodeling
csl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
COCSUDRAFT_15779
03083 Polycomb repressive complex
COCSUDRAFT_15779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csl03036
]
COCSUDRAFT_15779
Enzymes [BR:
csl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
COCSUDRAFT_15779
Chromosome and associated proteins [BR:
csl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
COCSUDRAFT_15779
HDAC complexes
Sin3A-HDAC complex
COCSUDRAFT_15779
BRAF-HDAC complex
COCSUDRAFT_15779
REST complex
COCSUDRAFT_15779
SHIP complex
COCSUDRAFT_15779
MiDAC complex
COCSUDRAFT_15779
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
COCSUDRAFT_15779
Heterochromatin formation proteins
Other heterochromatin formation proteins
COCSUDRAFT_15779
Chromatin remodeling factors
NuRD complex
COCSUDRAFT_15779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
17040937
NCBI-ProteinID:
XP_005647493
JGI:
15779
UniProt:
I0YX30
LinkDB
All DBs
AA seq
462 aa
AA seq
DB search
MQVSYFYDPDIGTFYYGPNHPMKPHRITLTNNLILHYGLYNMLESYKPRKATGEDMVDFH
SEEYINFLQSVTPQNKDQYAKQMQMFNVGEDCPVFSGQFRFCQLYAGGSIGGAVKLNYGL
SDVVINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYNARVLYIDIDIHHGDGVEEAFM
MTDKVMTVSFHKYGGGFFPGTGDLGSVGRGQGKHHSINVPLKDGMTDTAYEMLFKPVMRR
VVDVYQPEVIVFQSGADSLAGDKLGAFNLLLTLLLRHALQGHAECQQYMMSFGLPMLVLG
GGGYNIASVARCWAYETGRILGVELEDELPENDHQSLFQPGAKLHLPLPENLENLNTRQY
LENLQRKIFVNIARIGSATGQEFRERPPDAMAPEDMETEGPSDEADDSSPPEGDSAWPGG
DSGQRAQLWDGRGRFEDAPLETGPGSSGRARIDLDYSRGELI
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgtcatatttctatgacccggacattgggactttctactatggccccaaccat
cccatgaagccgcaccgcatcactctcaccaacaatctcattctgcactacggcctgtac
aacatgctcgagtcgtacaagccgcgcaaggcaactggagaagacatggtggactttcac
agcgaggagtacattaacttcctgcagagcgtcacccctcagaacaaggatcagtatgca
aagcagatgcagatgttcaatgtgggcgaggactgcccagtcttcagcggccagttcagg
ttctgccagttatatgcgggagggtccattggaggtgctgtaaagctcaactatggactg
tcagatgtggtcatcaactgggcggggggactgcaccacgccaaaaaaagcgaggcgagc
ggcttctgctatgtgaatgatatagtgctggcgattctggagctgctgaagtacaacgcg
cgtgtgctctacatcgacatagacatccaccatggcgacggcgtggaggaggccttcatg
atgaccgacaaagtgatgactgtcagcttccacaaatatggcggcggcttcttccccggc
accggcgacctcggcagcgtcggccgcggccagggcaagcaccactcgatcaatgtgccg
ctcaaagatggcatgacggatacggcttacgaaatgctgttcaaaccggtcatgcggcga
gtcgtggacgtctaccagccagaagtcatcgtcttccagagcggcgcagactcgctcgcg
ggcgacaagctgggagccttcaacctgttgctgacgctcttgctgcgtcacgctttgcag
ggtcacgcggagtgtcagcagtacatgatgtcattcgggctgcccatgctggtcctgggc
gggggcggctacaacattgccagcgtggcgcgctgctgggcctacgagacaggccgcatc
ctcggcgtggagttggaggacgagctgccggagaacgaccaccagagcctgttccagccg
ggcgccaagctgcacctgccgctgccggagaacctggagaacctcaacacgcgccagtac
ctggaaaatctgcagcgcaaaatcttcgtcaacatcgcccggatcggatcggcgacgggg
caagagttccgggagcggccgccggacgcgatggcgcccgaggacatggagacagaaggc
cccagcgacgaagccgatgactcatcgcctccggaaggtgactcagcatggccgggcggt
gactcagggcagcgcgcgcagctgtgggacggccgcggccggttcgaggatgcgcccctg
gagacaggacccggcagcagcggccgcgcgcgtattgacctggactacagccggggtgag
ttgatctga
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integrated database retrieval system