KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_15779
Entry
COCSUDRAFT_15779  CDS       T02914                                 
Name
(RefSeq) histone deacetylase 3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03082  ATP-dependent chromatin remodeling
csl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    COCSUDRAFT_15779
   03083 Polycomb repressive complex
    COCSUDRAFT_15779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csl03036]
    COCSUDRAFT_15779
Enzymes [BR:csl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     COCSUDRAFT_15779
Chromosome and associated proteins [BR:csl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     COCSUDRAFT_15779
   HDAC complexes
    Sin3A-HDAC complex
     COCSUDRAFT_15779
    BRAF-HDAC complex
     COCSUDRAFT_15779
    REST complex
     COCSUDRAFT_15779
    SHIP complex
     COCSUDRAFT_15779
    MiDAC complex
     COCSUDRAFT_15779
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     COCSUDRAFT_15779
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    COCSUDRAFT_15779
  Chromatin remodeling factors
   NuRD complex
    COCSUDRAFT_15779
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 17040937
NCBI-ProteinID: XP_005647493
JGI: 15779
UniProt: I0YX30
LinkDB
AA seq 462 aa
MQVSYFYDPDIGTFYYGPNHPMKPHRITLTNNLILHYGLYNMLESYKPRKATGEDMVDFH
SEEYINFLQSVTPQNKDQYAKQMQMFNVGEDCPVFSGQFRFCQLYAGGSIGGAVKLNYGL
SDVVINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYNARVLYIDIDIHHGDGVEEAFM
MTDKVMTVSFHKYGGGFFPGTGDLGSVGRGQGKHHSINVPLKDGMTDTAYEMLFKPVMRR
VVDVYQPEVIVFQSGADSLAGDKLGAFNLLLTLLLRHALQGHAECQQYMMSFGLPMLVLG
GGGYNIASVARCWAYETGRILGVELEDELPENDHQSLFQPGAKLHLPLPENLENLNTRQY
LENLQRKIFVNIARIGSATGQEFRERPPDAMAPEDMETEGPSDEADDSSPPEGDSAWPGG
DSGQRAQLWDGRGRFEDAPLETGPGSSGRARIDLDYSRGELI
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgcaggtgtcatatttctatgacccggacattgggactttctactatggccccaaccat
cccatgaagccgcaccgcatcactctcaccaacaatctcattctgcactacggcctgtac
aacatgctcgagtcgtacaagccgcgcaaggcaactggagaagacatggtggactttcac
agcgaggagtacattaacttcctgcagagcgtcacccctcagaacaaggatcagtatgca
aagcagatgcagatgttcaatgtgggcgaggactgcccagtcttcagcggccagttcagg
ttctgccagttatatgcgggagggtccattggaggtgctgtaaagctcaactatggactg
tcagatgtggtcatcaactgggcggggggactgcaccacgccaaaaaaagcgaggcgagc
ggcttctgctatgtgaatgatatagtgctggcgattctggagctgctgaagtacaacgcg
cgtgtgctctacatcgacatagacatccaccatggcgacggcgtggaggaggccttcatg
atgaccgacaaagtgatgactgtcagcttccacaaatatggcggcggcttcttccccggc
accggcgacctcggcagcgtcggccgcggccagggcaagcaccactcgatcaatgtgccg
ctcaaagatggcatgacggatacggcttacgaaatgctgttcaaaccggtcatgcggcga
gtcgtggacgtctaccagccagaagtcatcgtcttccagagcggcgcagactcgctcgcg
ggcgacaagctgggagccttcaacctgttgctgacgctcttgctgcgtcacgctttgcag
ggtcacgcggagtgtcagcagtacatgatgtcattcgggctgcccatgctggtcctgggc
gggggcggctacaacattgccagcgtggcgcgctgctgggcctacgagacaggccgcatc
ctcggcgtggagttggaggacgagctgccggagaacgaccaccagagcctgttccagccg
ggcgccaagctgcacctgccgctgccggagaacctggagaacctcaacacgcgccagtac
ctggaaaatctgcagcgcaaaatcttcgtcaacatcgcccggatcggatcggcgacgggg
caagagttccgggagcggccgccggacgcgatggcgcccgaggacatggagacagaaggc
cccagcgacgaagccgatgactcatcgcctccggaaggtgactcagcatggccgggcggt
gactcagggcagcgcgcgcagctgtgggacggccgcggccggttcgaggatgcgcccctg
gagacaggacccggcagcagcggccgcgcgcgtattgacctggactacagccggggtgag
ttgatctga

DBGET integrated database retrieval system